Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01423 ATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCCGCGAAGCCTTTTGTTGCTCCGGCAGTGAATCCGCAAGATCTCCCCGTCGATTATTCCGGCTTCATCGCCGTAGTTTTCGGGATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGCTAGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAATATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATATTCAGAATTGATTGCATCCTCAATACTTGTGATTTAGGAACCTTGATACGGATTGGATTCTATCATTGTAGTTTTAGTTTACCTCGTGTAAAACTCAGTCTATACAGGCCATCTTGGGTTTGCTATTATGGGATTAGTGACAAATTACTTGGGACCTGCACGACCAGGAACAAAAAAAACAAAAATATATTATTTAAAGAATCGACGAGGGCATCATCAAAACAACGAACCCCCGAACTCTCAAATATCTCTCACAGCAACGCAACGATACTCACGCCGCCTCCCTCAGCCACACGCCCGCCGGACGCCAATAGTCTCACCGCCGCTCCCGGCCGTGCCGTCGAGTCCCGCCGTCCACCGCCGGTAGTTTGTCCCTTCCACCTGTCTGATTTCTCTCTCTCTCATTGTCTTATCTCTCTTAACCGCAGCAGTGCCCAACCTCCAACACGCCACCCCACGTCCGCCAACCACCATTCGCCGATCTCTGCGCCGCCGTCGTTGCGAGCTATCACAGCCGCCGGAGGTGATCGGGGAGATGGGGGGCGAAAACGACTTGAAAACGTGGGTTTCGGATCAGTTAATGTCACTGCTTGGTTTTTCTCAGCCAACGATTGTGCAGTATATGATTGGACTATGTACTGCTTCTCCTTATTTACCAAACAAGCAACATCACCTGCCGATGTAGTGAGCAAGTTGGTGATAGATTTCTCCTTGCCATCTTCCGGTGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGCAATCATCTGGTTTAAATCTTTATCAGAAGCAAGAGAGAGAAGCTGCAATTTTGGCAAGAAAACAAAATACATATGCACTGCTTGATGCTGACGACGAAGATGTTGTTGAAGATAAAGGACGCAGCAGTGATCAGAGAGAAACAGAAAATCGCAAGAAACATTTTAGAAAGAAACATGAATATCAAGAAGATGAAGATGATGAGAAGGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAACGACAGGCATCCAGTTCTGAAGACGATGACTCTGAGTCGGAGGAGGAGCGATTGCAAGATCAAAGAGAGAGGGAGCAATTAGAGCGAAATATAAGGGAAAGGGATGCTGCAGGAACCAAAAAGTTAACAGAGCAGAAATTGAGCAGGAAGGAGGAAGAAGAGGCAATTCGAAGATCAGAAGCTTTGGAGAATAATGGAATTGATACTTTGAGGTTTACTACTGCTACCTTTACTCAGTTTTCTTCATGGAAAGTTTCAAGACAGGAGTATTTAAAGAAAAGGGAGGAGAAGAAAGTGGAAGAAATCAGAGATGATATAGAAGATGAGCAATATCTTTTTGGAGGTGTGAAGCTTACTGAAGTAGAGTATCGGGAGCTAAGGATCAAATGTGGCCGCACAATTAATAAGCCAGTGTATAAGAAGGAAATATATGAGCTTGTGAAGAAGCGGACAGATGAGGCTGATGACATCACTGAGTACAGGATGCCTGAAGCTTATGATCAGGAAGGGGGTGTTAATCAGGACAAGAGGTTTGCAGTGGCATTGCAGCGGTATAGGGATTCGGGTGCTGCCGATAAAATGAACCCGTTTGCAGAACAAGAGGCATGGGAAGAACACCAAATAGGTAAGTGCCACTTCTCTGAGGACCTAGTATTGCTCCTTCGTCAGATTCTGAAACAAAATTATCCTTCAGGGAAAGCAACAATGAAATTCGGTTCGAAAAACAAAAAGCAAGCATCAGATGACTATCAGTTTGTATTTGAGGATCAGATTGAGTTTATTAAGGCATCAGTTATGGAAGGTGATGAGTTTGTTGATGAACGTCAGACTGAATCACTTGAGAAGTCCAAGGCTAAGTCAGCTCTGGAGAAGCTGCAGGTTTTGATTATGATCACTCTTTGTTGTATCAAGTCTTTGTATTATCCGATTGGACGGGTTTTTTCAAGAGGAATGGGAGGCAATAAACTTTCTCTGGAGATGATGATTAATATGTTCGAGGAGAGAAAAACATTGCCAATCTATCCATATCGTGATCAGTTACTCCAAGCTGTCAATGATTATCAGGTTCTTGTAATTGTTGGTGAAACTGGTTCTGGAAAGACCACACAGATACCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGAAAAGTTGGATGCACACAACCACGTCGAGTTGCTGCTATGAGCATTGCTGCTCGAGTATCTCAAGAACTGGGTGTCAAGCTTGGGCATGAGGTGATATGGGACAAACAACCTCTTTCATTCTTTGCATTTACTAACTTCCATTACAAATTTGTGCAACCTTCTTTGGTTTGTTGTTTCACTCTCATATTGGTATCTAGTGAATATATCGTGGTTGGTTATTCAATACGTTTTGAGGATTGTACGTCAGATAAGACTGTTTTAAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGTGAACCCGACCTTGCAAGCTACAGTGTTATAATGGTGGATGAGGCTCATGAAAGAACATTATCAACTGATGTTTTGTTTGGGTTAGTGAAGGATATTGCTAGGTTTCGACCTGATTTGAAGTTGCTAATTTCAAGTGCGACACTTGATGCCGAGAAGTTCAGTGATTACTTTGATTCAGCACCAATATTTAAAATTCCTGGTAGACGTTATCCTGTAGAAATTAACTTCACAAAAGCTCCAGAAGCAGACTATTTAGATGCAGCAATCGTGACTGCACTTCAGATCCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCAGCCGAGGAAATAATGAAACATAGAACTCGGGGACTAGGCACCAAAATTGCAGAACTCATTATCTGCCCCATATATGCTAACTTACCAACAGAGCTACAAGCTAAGATATTTGAACCCACACCCATAGGAGCAAGGAAAGTTGTCCTAGCAACTAATATAGCAGAGACATCCTTGACGATTGATGGGATAAAATATGTCATTGATCCTGGTTTTTCAAAAATAAAATCATATAACCCAAGGACTGGGATGGAGGCGTTGCAAGTGAGTCCCATCTCTAAAGCATCAGCAAATCAGAGAGCAGGGCGTTCTGGACGAACAGGCCCTGGAATGTGCTTTCGTTTGTATACGGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATACAAAGAACAAACCTTGCTAATGTCGTGCTTACACTTAAGAGCCTTGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCAACCTCCATCTGAAGCATTACTAAAAGCTTTGGAACTGCTTTATGCACTTGGTGCTCTAAATAAACTTGGTGAACTGACTAAGTTGGGTAGGCGGATGGCAGAGTTTCCTCTTGATCCCATGCTTTCTAAGATGATGGTTGCTTCTGAAAAATTCAAGTGTTCAGATGAGATTATTTCTATTGCAGCTATGCTTTCTATTGGAAATTCTATTTTTTATCGTCCCAAGGATAAACAAGTTCATGCTGACAATGCTCGGATGAATTTTCACACTGGGAATGTGGGGGATCACATTGCACTGTTGAAGGTCTACAACTCGTGGAGGGAAACTAATTACTCTACACAATGGTGCTACGAGAATTATATCCAGGTTAGAAGTATGAAACGTGCTAGAGATATCAGAGATCAACTTGAAGGGCTTTTAGAAAGGGTTGAAATCGAATTAACTTCAAATTTGAATGACTTGGATGCAATAAAGAAGACCATAATATCTGGGGGGATTATGAGGGGTTACAAAATTGGGTTTTCCTGGAACCTGTTCAGCTTAAAGTTGGCAATGGAAGTTTGGGTTTTTGGCAATCTAACTTTTGAAGTACGAAATGCAGCTGCAGTTTTCAAATATGTAATGTTACGAACACTAACTAATAGGATGTACTTTGATCTGGTTGTGCAATTTATATCACTGGAGATTTCCCCTGGACTAATGTGGACGTCAGTTATACGAGGTTCTTCGAGAAACCATCAGGCTTCATCTCCATTCATTTTTTCACTAAATGGTGCAACGATTAAGGAGTTTGAAATGGCTGGATTTTTTCCTCACTCTGCAAAGTTACAAAAGAATGGCTCTTATCGGACTGTTAAGCATCCGCAGACGGTTCATATACATCCTAGTTCAGGGTTGGCTCAGGTTCTTCCAAGATGGGTTGTATACCACGAATTGGTATGTACCTCAAAAGAATATATGAGACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTCAAGGATGTTGAAGATTTGAGTTCAAAAAAGATGCCTCGTGGACAAGGTCGTGCAAGTGCTACTGGAGAAGCAGGTAGTTGA 4647 42.33 MSTQANDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNMENDLKQISMAMIFRIDCILNTCDLGTLIRIGFYHCSFSLPRVKLSLYRPSWVCYYGISDKLLGTCTTRNKKNKNILFKESTRASSKQRTPELSNISHSNATILTPPPSATRPPDANSLTAAPGRAVESRRPPPVVCPFHLSDFSLSHCLISLNRSSAQPPTRHPTSANHHSPISAPPSLRAITAAGGDRGDGGRKRLENVGFGSVNVTAWFFSANDCAVYDWTMYCFSLFTKQATSPADVVSKLVIDFSLPSSGETLAFAEGIFSRVPRKQSSGLNLYQKQEREAAILARKQNTYALLDADDEDVVEDKGRSSDQRETENRKKHFRKKHEYQEDEDDEKESALERENRQVKRQASSSEDDDSESEEERLQDQREREQLERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSEALENNGIDTLRFTTATFTQFSSWKVSRQEYLKKREEKKVEEIRDDIEDEQYLFGGVKLTEVEYRELRIKCGRTINKPVYKKEIYELVKKRTDEADDITEYRMPEAYDQEGGVNQDKRFAVALQRYRDSGAADKMNPFAEQEAWEEHQIGKCHFSEDLVLLLRQILKQNYPSGKATMKFGSKNKKQASDDYQFVFEDQIEFIKASVMEGDEFVDERQTESLEKSKAKSALEKLQVLIMITLCCIKSLYYPIGRVFSRGMGGNKLSLEMMINMFEERKTLPIYPYRDQLLQAVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLGHEVIWDKQPLSFFAFTNFHYKFVQPSLVCCFTLILVSSEYIVVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMEALQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKLGRRMAEFPLDPMLSKMMVASEKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGGIMRGYKIGFSWNLFSLKLAMEVWVFGNLTFEVRNAAAVFKYVMLRTLTNRMYFDLVVQFISLEISPGLMWTSVIRGSSRNHQASSPFIFSLNGATIKEFEMAGFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDLSSKKMPRGQGRASATGEAGS 1548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24777605 24808206 + Lsi06G014230.1 Lsi06g01423 666153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01423 1548 Coils Coil 409 450 - -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 224 242 - -
Lsi06g01423 1548 SMART ha2_5 1189 1281 IPR007502 GO:0004386
Lsi06g01423 1548 CDD SF2_C_RHA 975 1136 - -
Lsi06g01423 1548 SMART helicmild6 1023 1128 IPR001650 -
Lsi06g01423 1548 PANTHER ATP-DEPENDENT RNA HELICASE 1442 1542 - -
Lsi06g01423 1548 Gene3D - 974 1149 IPR027417 -
Lsi06g01423 1548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 768 971 IPR014001 -
Lsi06g01423 1548 Pfam Helicase associated domain (HA2) 1190 1264 IPR007502 GO:0004386
Lsi06g01423 1548 Pfam Helicase conserved C-terminal domain 1000 1128 IPR001650 -
Lsi06g01423 1548 PANTHER OS05G0389800 PROTEIN 874 1345 - -
Lsi06g01423 1548 PANTHER OS05G0389800 PROTEIN 1442 1542 - -
Lsi06g01423 1548 Coils Coil 1307 1327 - -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 147 174 - -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 224 262 - -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 373 427 - -
Lsi06g01423 1548 SMART ultradead3 756 980 IPR014001 -
Lsi06g01423 1548 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1447 1518 IPR011709 -
Lsi06g01423 1548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 994 1169 IPR001650 -
Lsi06g01423 1548 Coils Coil 512 532 - -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 373 472 - -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 437 472 - -
Lsi06g01423 1548 Pfam PAT complex subunit Asterix 5 86 IPR005351 GO:0030176|GO:0044183|GO:0045048
Lsi06g01423 1548 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 913 922 IPR002464 -
Lsi06g01423 1548 MobiDBLite consensus disorder prediction 145 199 - -
Lsi06g01423 1548 PANTHER ATP-DEPENDENT RNA HELICASE 874 1345 - -
Lsi06g01423 1548 PANTHER ATP-DEPENDENT RNA HELICASE 374 835 - -
Lsi06g01423 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 754 832 IPR027417 -
Lsi06g01423 1548 Gene3D - 1173 1331 - -
Lsi06g01423 1548 PANTHER OS05G0389800 PROTEIN 374 835 - -
Lsi06g01423 1548 Gene3D - 740 973 IPR027417 -
Lsi06g01423 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1322 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01423 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - csv:101206270 1617.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01423 Lsi-Chr6:24777605 Lsi11g00480 Lsi-Chr11:5083838 0 dispersed
Lsi11g00481 Lsi-Chr11:5087161 Lsi06g01423 Lsi-Chr6:24777605 8.01E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g637 . . . . . . . . . . Cma10g00228 . Car10g00213 Car11g00179 Sed08g0258 . Cpe04g01468 Bhi02g00695 Tan09g2054 Cmetu02g0232 . . . . Cla06g01548 Cam06g1709 Cec06g1769 Cco06g1770 Clacu06g1676 Cmu06g1622 Cre06g2435 Cone2ag0818 . . . . . . . . . . . . . . . . Cmo10g00240 Cmo11g00203 . . . . . Cpe18g00765 . . . . . . . . . . . . . . Lsi06g01423 Csa01g00281 Chy02g02453 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01423 Lsi_Chr06 FPKM 8.91907 8.030712 6.729205 7.872406 12.503484 12.445724 12.536209 10.136259 9.20462 10.175218
Lsi06g01423 Lsi_Chr00 FPKM 5.783578 6.088989 5.95894 6.555654 8.759931 9.414587 8.924722 7.643965 6.910172 7.702634