Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01427 ATGGGGTGCTATGCTAGTAAGAATGCAGATTCAAAGGCCAGCAGAATGGCTCGATGGCGAGCTACTGGCATCGTGGCTTTGCGAGACTCAAAGTTAAAGACATTTCCTGATGAAGTTCTTGACATGGACAGATCTGTCCGCACCCTTGATTTAACAAACAATAAAATAGTCGATATTCCTATGGAAGTCTGCAAATTAATAAACATGCAGCGTCTGGTTTTGGCAGATAACCTTATTGAGCGTCTACCAATGAATTTGGGGAAGCTCCAATCTCTAAAAGTTATGATACTTGATGGAAATCACATTACGACATTGCCTGATGAATTGGGTCAGCTAGTAAGGCTTGAACGTCTATCTGTCTCCCGAAATTTGCTTTCATCCTTACCTGAAACCATTGGAAGCTTGCGGAATAGACTAACACCGAGTTTGATGATGCAGTTGTTGCTTATCAATGTGTCAAACAACAAGTTAAAATCTCTCCCAGAATCAATAGGAAGTTGCTTCTCCCTCGAAGAATTGCAAGCAAATGATAATCTTATGGAAGAGCTTCCCTCATCTTTGTGCAATTTGATTCACCTGAAGTCGTTGCGTTTAGATAATAACAATATTGGTCAGTTACCATCAAATCTGTTGAAAGATTGCAAAGCATTGCAGAATGTTTCTTTGCACGGGAATCCAATTTTAATGGATCAATTTCAGCAGATGGAAGGATTTGAGGATTTTGAAGCTAGGAGAAAAAAGAAATTTGACAAACAAATTGATTCTAATGTCATGATTAGCTCCAAGGGCCTTGATGAGGGTGTCGATCTATAG 813 39.61 MGCYASKNADSKASRMARWRATGIVALRDSKLKTFPDEVLDMDRSVRTLDLTNNKIVDIPMEVCKLINMQRLVLADNLIERLPMNLGKLQSLKVMILDGNHITTLPDELGQLVRLERLSVSRNLLSSLPETIGSLRNRLTPSLMMQLLLINVSNNKLKSLPESIGSCFSLEELQANDNLMEELPSSLCNLIHLKSLRLDNNNIGQLPSNLLKDCKALQNVSLHGNPILMDQFQQMEGFEDFEARRKKKFDKQIDSNVMISSKGLDEGVDL 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24820216 24826130 - Lsi06G014270.1 Lsi06g01427 666157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01427 270 Gene3D Ribonuclease Inhibitor 4 142 IPR032675 -
Lsi06g01427 270 SMART LRR_typ_2 66 88 IPR003591 -
Lsi06g01427 270 SMART LRR_typ_2 112 135 IPR003591 -
Lsi06g01427 270 SMART LRR_typ_2 144 167 IPR003591 -
Lsi06g01427 270 SMART LRR_typ_2 89 111 IPR003591 -
Lsi06g01427 270 SMART LRR_typ_2 190 213 IPR003591 -
Lsi06g01427 270 SMART LRR_bac_2 146 163 - -
Lsi06g01427 270 SMART LRR_bac_2 89 108 - -
Lsi06g01427 270 SMART LRR_bac_2 169 186 - -
Lsi06g01427 270 SMART LRR_bac_2 112 131 - -
Lsi06g01427 270 SMART LRR_bac_2 190 209 - -
Lsi06g01427 270 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 7 7 262 - -
Lsi06g01427 270 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Lsi06g01427 270 Gene3D Ribonuclease Inhibitor 143 264 IPR032675 -
Lsi06g01427 270 PANTHER LEUCINE-RICH REPEAT-CONTAINING 7 262 - -
Lsi06g01427 270 SUPERFAMILY L domain-like 27 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01427 - - - csv:101206028 483.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01427 Lsi-Chr6:24820216 Lsi10g01452 Lsi-Chr10:18603029 5.41E-39 dispersed
Lsi06g01427 Lsi-Chr6:24820216 Lsi06g01225 Lsi-Chr6:22638961 7.84E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g624 . . . . . . . . . . Cma10g00225 . Car10g00209 Car11g00122 . . Cpe04g01470 Bhi02g00262 Tan09g2060 . . . . . Cla06g01553 Cam06g1716 Cec06g1777 Cco06g1776 Clacu06g1684 Cmu06g1629 Cre06g2440 . . Cone13ag0044 Cone19ag0049 . . . . . . . . . . . . . Cmo10g00236 Cmo11g00201 . . . . . Cpe18g00768 . . . . . . . . . . . . . . Lsi06g01427 Csa01g00277 Chy02g02455 Cme02g01843
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008328 2 2 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01427 Lsi_Chr06 FPKM 26.125919 29.039795 8.03356 8.579693 20.601749 21.936705 21.081459 5.074312 3.808151 3.8909