Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01438 ATGTCGAAATTTGTACATACCCAAGCGATGGATCTTCCGTCTCAGAGAACTAACGAGAGAAAGATTCCTGATTACAAGGACGCCCTCCATAAGGAAGCCAATGGCGTGCGGAGGGACGGGTATTTCCTCATGAAACTCATAGACGACTCTGTTTCGCATAATGGGTTCGAATCTATTGCTCTTATTTTCTCTAAGTTTCGTGGTTCTATTAATTCTCAGCTGTGTAACTCGATGATCAGGGGTTATTTGGATTTGAATAAGCATTTAAATTCACTCTTCATTTTTGCCCACATGCATAAATTCAGTATTCTGCCCGATTCCTCCACTTTTCCTGCTGTTCTTAAAGCAACTGCACAGCTACGTGATACTGAAGTTGGAAAAATGATACACGGTACTGTTTTTCGGATGGGTTTTATTCATGATGTCTACACAAGCACCGCTCTTGTTCATATGTATTGTACTTGTTTGTCTATATCCGATGCTTCGCAGGTGTTCGACGAAATGCCCGAGAGAAATGGAGTTACTTGGAATGCTCTGATTACTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTCCGAGAAATGCTGGCAGCTGGGGCTGAACCGAGTGAGAGAACCGTGGTGGTAGTTCTATCAGCTTGTGCTCATTTGGGAGCTTTGAATCAGGGAAAGTGGATTCATGAGTTTATATATCATAATAGGTTGAGACTGAACGTGTTTGTGGGCACAGCACTTATTGATATGTATGCTAAATGTGGGGCTGTTGATGAGGCAGAGAAGGTCTTGGAAGAAATTAGAGAGAAGAATGTCTATACATGGAATGTCTTGATTTCTGGATATGCTATGAATGGGCAAGGCGATGCAGCTTTGCAGGCTTTTTCTAGGATGTTGATGGAAAATTTCAAGCCAGATGAGGTTACCTTCCTAGGTGTCTTGTGTGCATGCTGTCACCAAGGTCTGGTCACGGAAGGGCGCAGGCAATTCATGAGCATGAAACAACAGTTTGGACTGCAACCAAGGATAGATCATTATGGGTGTATGGTTGACCTACTTGGTCGAGCGGGATTGTTGGAGGAAGCTCTAGAGTTAATCCAATCCATGAGCATGGAGCCAGACCCTATCATTTGGAGGGCTCTACTTGGTGCTTGTAGAGTCCATGGGAATACAAAATTGGGTGAATATACTATCAGAAGACTTATAGAACTAGAACCAAACAATGGGGAGAATTATGTCTTGCTGTCAAATCTATACTCAAGGGAACATCGGTGGGTTGAAGTAGGGAAGTTGAGAGGAATGATGAGTCTCAGGGGGATTGGAAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAATGTAGTTTATGAGTTTGCTGCATCAAATGACAGAAAACCAGAATTTGAAGCAGTATACAGGCAGTTGGATAATTTGATTGAGAAATTGAAAGAAAACGGTTACGTTACAGGAACTGACATGGCTTTATATGATATTGAGAAAGAAGAGAAAGAACATTCGGTGATGTACCATAGCGAAAAATTTGCTTTAGCATTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAATCTGAGAATTTGCATGGACTGCCACGAGTTTTTCAAGGTTGTATCACTTGTCTATAAAAGATATATTGTTGTAAGAGACAGAAACCGTTTCCACCATTTTTCTGAAGGTTTCTGTTCGTGTCGAGACTATTGGTGA 1743 41.25 MSKFVHTQAMDLPSQRTNERKIPDYKDALHKEANGVRRDGYFLMKLIDDSVSHNGFESIALIFSKFRGSINSQLCNSMIRGYLDLNKHLNSLFIFAHMHKFSILPDSSTFPAVLKATAQLRDTEVGKMIHGTVFRMGFIHDVYTSTALVHMYCTCLSISDASQVFDEMPERNGVTWNALITGYTHNRKFMEAINAFREMLAAGAEPSERTVVVVLSACAHLGALNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVDEAEKVLEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRRQFMSMKQQFGLQPRIDHYGCMVDLLGRAGLLEEALELIQSMSMEPDPIIWRALLGACRVHGNTKLGEYTIRRLIELEPNNGENYVLLSNLYSREHRWVEVGKLRGMMSLRGIGKVPGCSSIEINNVVYEFAASNDRKPEFEAVYRQLDNLIEKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKFALAFGLLNSPLDCTLRIVKNLRICMDCHEFFKVVSLVYKRYIVVRDRNRFHHFSEGFCSCRDYW 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24921817 24923559 - Lsi06G014380.1 Lsi06g01438 666168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01438 580 Pfam PPR repeat 347 372 IPR002885 -
Lsi06g01438 580 Pfam DYW family of nucleic acid deaminases 488 580 IPR032867 GO:0008270
Lsi06g01438 580 PANTHER - 28 554 - -
Lsi06g01438 580 Gene3D Tetratricopeptide repeat domain 291 467 IPR011990 GO:0005515
Lsi06g01438 580 Gene3D Tetratricopeptide repeat domain 71 234 IPR011990 GO:0005515
Lsi06g01438 580 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 28 554 - -
Lsi06g01438 580 Pfam E motif 390 452 IPR046848 -
Lsi06g01438 580 Pfam PPR repeat family 272 321 IPR002885 -
Lsi06g01438 580 Pfam PPR repeat family 172 219 IPR002885 -
Lsi06g01438 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Lsi06g01438 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 272 IPR002885 -
Lsi06g01438 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lsi06g01438 580 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Lsi06g01438 580 TIGRFAM PPR: pentatricopeptide repeat domain 348 372 IPR002885 -
Lsi06g01438 580 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Lsi06g01438 580 SUPERFAMILY TPR-like 253 427 IPR011990 GO:0005515
Lsi06g01438 580 Coils Coil 467 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01438 - - - mcha:111006955 1038.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02382 Lsi-Chr2:30498569 Lsi06g01438 Lsi-Chr6:24921817 3.71E-24 dispersed
Lsi06g01438 Lsi-Chr6:24921817 Lsi06g00945 Lsi-Chr6:19384143 9.43E-54 dispersed
Lsi06g01438 Lsi-Chr6:24921817 Lsi02g02703 Lsi-Chr2:33403074 7.34E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01438 Lsi_Chr06 FPKM 17.624846 18.819729 16.726334 15.437091 14.162638 14.775459 14.72646 24.99431 24.418173 26.70602