Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01441 ATGAAGGAGAAAGACACTGATAATCATTCATGGCGTCTTCCAATTATCACTTTCTTCATCTTAATCACAGGTACTATTGTCGAGGGACAAGAATTGCAGAGAGACACAGAAGTTTTGTTACAGTTGAAATCATTTTTAGAAGAACACAATCCCATTAAACGAGGAAAATATTCGTTTTGGAATTTGCAGAGCTCGCCCTGTTCTTGGTCTGGAATATCCTGTAATCAAATCAAGTCCCGAGTCACCGGAATTGACCTTTCAAACGAAGATATTTCCGGCAAAATTTTTCATAATTTCTCTGCCTTGCCGGAGCTGACTGACCTTGACCTCTCTAGAAACACTCTCTCCGGCGAAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGCGGCTGAATTTGTCGCACAACATCATCAACGACAAGTTCAACTTGTCGGGATTGGTCAATATCGAGACTCTGGATTTGTCGGTCAACCGGATTTGGGGAGAAATAAGGCTGAATTTTCCAGGCATTTGCAGAAATTTGACGTTCTTTAATGTTTCTGGTAATAATTTCACTGGTCGGACGGATGACTGTTTTGATGAGTGCTGGAATTTGCAGCATGTGGATTTAAGCTCCAACGGTTTCAGTGGTGGATTGTGGGGTGGGTTGGCGAGGACTCGGATTTTTTCGGGGTCGGAGAATAAACTTTCCGGCGTGGTCTCGCCGGCGATATTTACAGGGGTTTGTAATTTGGAAGCGTTGGACTTGTCAGAGAATGAGCTTATCGGCGGAGTTCCAGCGGAGGTTTCTAATTGTGGGAATTTATCCTCTTTGAATCTGTGGGGGAACCATTTTTCCGGGAAAATTCCGGCGGAAATTGGAAGAATTTCGGGTTTGCAGAACTTATATCTGGGAAAGAACAATTTTTCTCGGGAAATCCCAGAATCCCTTTTGAATTTGAGCAATTTGGTGTTTCTTGATTTGAGCAAGAACAATTTCCGAGGGGACATTCAAGAAATTTTCGGAAGGTTTACACAGGTGAGATTTCTTGTTCTTCATGGGAACTTTTACACTGGAGGGATATATTCTTCTGGGATTCTTAAGTTGCCAAGAGTTGCTCGTTTGGATTTGAGTTTCAACAACTTTTCAGGTCCATTGCCTGTGGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAATCAGTTCAATGGGAGCATTCCATCAGAATATGGGAACTTGCAGAATCTTCAAGCTCTTGATCTCTCATTCAACAGCTTAAATGGGTCAATCCCAAGCAGCTTTGGGAACTTGACTTCACTCTTGTGGCTAATGCTGGCAAACAACTCTTTGACAGGTGAAATTCCCAGGGAGCTGGGGAATTGTTCTAGCTTGTTGTGGTTGAATCTTGCCAACAATAAGCTACATGGGAGCCTCCCGTCTGAGCTAGCGAAGATTGGAAAAAATGCCACAGCGACGTTCGAAATGAATCGACGAACCGAAAAATTCATCGCTGGATCAGGGGAGTGCTTGGCAATGAAGAGATGGATTCCAGTAGACTACCCTCCTTTCAGCTTTGTCTACACAATCCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTAAAAGGGTATGGCCTTTTCCCATTTTGCAGCAAAATAAGGACTTTGCAGATCTCTGGTTATGTTCAACTGACTGGGAATCAGTTCAGTGGTGAGATACCAAATGAGATTGGATTGATGATGAACTTCAGTATGTTGCATTTGAGTTGCAACAATTTCAGTGGGAAACTCCCTCCACAGTTGGGAAATCTGCCGCTGGTTGTTCTCAACGTATCGGAAAACAATTTTTCAGGCGAGATCCCGACCGAGATTGGAGACCTCAAGTGCTTGCAAAATCTTGATTTATCATACAACAATTTCTCCGGCACGTTCCCTAGAAGTTTGGTCAACTTGAATGAGCTTATCAAGTTCAACATCTCATATAATCCTCTCATAACTGGGGAAGTAATTCCAAGTGGGCAATTCTCAACGTTCGACAAGGACTCATATCTCGGCAATCCTCTTTTGCGCCTTCCTTCTTTCTTCAACACAACCCCACCAAAGTCACCAGGCAACCCAAGAACGGCAGGATCTTCGAAAAGAAATTCAAGGCTAATTGGAATGTTGGCTTCCATATCACTGATCCTTGCTTTTTTGGTTTTTGGGACATTTTCTCTTATAGTTTTCTTAATGGTGAGAAGCTCAGATGAATCAAGAGGATTTCTCTTGGAAGATATAAAGTATATAAAAGACTTTGGTTCAAGTTCTCACAGCTCATCCCCATGGTTTTCGAATACGGTTACGGTCATTCGTCTTGACAAGACGGTTTTTACACATGCTGATATTCTAAAAGCCACTGGAAACTTTTCAGAGGGTAGGGTGATTGGTAAAGGAGGATATGGAACAGTTTACAGAGGAATGTTACCTGATGGAAGGCAAGTAGCAGTGAAGAAGCTTCAGAGAGAAGGAATTGAAGGTGAAAGAGAGTTCCAAGCTGAGATGCAGATTCTCAGTGGAAATGGTTTCAACTGGCCGCACCCAAACCTCGTTCAACTTTACGGATGGTGTCTTGATGGGTCGGAGAAGATTTTGGTCTATGAGTACATGGAAGGAGGGAGCTTGGAAGATCTCATACTAGACAGACTCAGACTAAACTGGCAGCGACGCATTGATCTTGCGATCGATGTGGCGCGAGCATTGGTCTTTCTGCACCATGAGTGTTTCCCCTCTGTTGTGCATCGTGATGTCAAGGCCAGTAATGTTCTGCTCGATAAAGACGGTCGAGGACGAGTGACAGACTTTGGCTTGGCTAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCCGGAACCATTGGTTATGTAGCACCCGAGTATGGACAAACATGGAAAGCTACAACAAAGGGCGATGTGTATAGTTTTGGAGTTTTGGCAATGGAACTTGCTACAGCAAGACGAGCGCTCGACGGAGGGGAAGAGTGTCTAGTTGAATGGGCCAAAAGGGTGATGGGAAATGGAAGACATGGGTTGAGTAGAGCAGTGATACCAGTTGCAGTTTTGGGGTCAGGCCTCGTCGAGGGGGCCGACGAGATGTGCGAGCTGCTCAAGATTGGGGTGAGGTGCACAAATGAAGCACCATTGGCAAGACCGAATATGAAGGAAGTTCTAGCTATGTTGATCAATATCATAGGCTTAAGAGGGGGGGATGAATTCAGCCACATCTTCTCCCCTCCATCCTTGTGA 3294 44.14 MKEKDTDNHSWRLPIITFFILITGTIVEGQELQRDTEVLLQLKSFLEEHNPIKRGKYSFWNLQSSPCSWSGISCNQIKSRVTGIDLSNEDISGKIFHNFSALPELTDLDLSRNTLSGEIPGDLNNCRNLRRLNLSHNIINDKFNLSGLVNIETLDLSVNRIWGEIRLNFPGICRNLTFFNVSGNNFTGRTDDCFDECWNLQHVDLSSNGFSGGLWGGLARTRIFSGSENKLSGVVSPAIFTGVCNLEALDLSENELIGGVPAEVSNCGNLSSLNLWGNHFSGKIPAEIGRISGLQNLYLGKNNFSREIPESLLNLSNLVFLDLSKNNFRGDIQEIFGRFTQVRFLVLHGNFYTGGIYSSGILKLPRVARLDLSFNNFSGPLPVEISEMKSLEFLILAYNQFNGSIPSEYGNLQNLQALDLSFNSLNGSIPSSFGNLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLHGSLPSELAKIGKNATATFEMNRRTEKFIAGSGECLAMKRWIPVDYPPFSFVYTILTRKSCRSIWDRLLKGYGLFPFCSKIRTLQISGYVQLTGNQFSGEIPNEIGLMMNFSMLHLSCNNFSGKLPPQLGNLPLVVLNVSENNFSGEIPTEIGDLKCLQNLDLSYNNFSGTFPRSLVNLNELIKFNISYNPLITGEVIPSGQFSTFDKDSYLGNPLLRLPSFFNTTPPKSPGNPRTAGSSKRNSRLIGMLASISLILAFLVFGTFSLIVFLMVRSSDESRGFLLEDIKYIKDFGSSSHSSSPWFSNTVTVIRLDKTVFTHADILKATGNFSEGRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGIEGEREFQAEMQILSGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLEDLILDRLRLNWQRRIDLAIDVARALVFLHHECFPSVVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMELATARRALDGGEECLVEWAKRVMGNGRHGLSRAVIPVAVLGSGLVEGADEMCELLKIGVRCTNEAPLARPNMKEVLAMLINIIGLRGGDEFSHIFSPPSL 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24936447 24940412 - Lsi06G014410.1 Lsi06g01441 666171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01441 1097 PRINTS Leucine-rich repeat signature 105 118 - -
Lsi06g01441 1097 PRINTS Leucine-rich repeat signature 412 425 - -
Lsi06g01441 1097 ProSiteProfiles Leucine-rich repeat profile. 128 149 IPR001611 GO:0005515
Lsi06g01441 1097 Pfam Leucine rich repeat 85 137 IPR001611 GO:0005515
Lsi06g01441 1097 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Lsi06g01441 1097 SMART serkin_6 803 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01441 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Lsi06g01441 1097 Gene3D Transferase(Phosphotransferase) domain 1 883 1083 - -
Lsi06g01441 1097 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1085 - -
Lsi06g01441 1097 Gene3D Ribonuclease Inhibitor 214 356 IPR032675 -
Lsi06g01441 1097 Gene3D Ribonuclease Inhibitor 542 703 IPR032675 -
Lsi06g01441 1097 SUPERFAMILY L domain-like 79 480 - -
Lsi06g01441 1097 SUPERFAMILY Protein kinase-like (PK-like) 783 1076 IPR011009 -
Lsi06g01441 1097 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 1085 - -
Lsi06g01441 1097 SMART LRR_typ_2 291 315 IPR003591 -
Lsi06g01441 1097 SMART LRR_typ_2 243 267 IPR003591 -
Lsi06g01441 1097 SMART LRR_typ_2 364 388 IPR003591 -
Lsi06g01441 1097 SMART LRR_typ_2 412 435 IPR003591 -
Lsi06g01441 1097 SMART LRR_typ_2 436 460 IPR003591 -
Lsi06g01441 1097 SMART LRR_typ_2 102 126 IPR003591 -
Lsi06g01441 1097 SMART LRR_typ_2 628 652 IPR003591 -
Lsi06g01441 1097 CDD STKc_IRAK 809 1079 - -
Lsi06g01441 1097 ProSiteProfiles Protein kinase domain profile. 803 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01441 1097 Pfam Protein kinase domain 804 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01441 1097 Gene3D Phosphorylase Kinase; domain 1 768 882 - -
Lsi06g01441 1097 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Lsi06g01441 1097 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Lsi06g01441 1097 SUPERFAMILY L domain-like 551 666 - -
Lsi06g01441 1097 Gene3D Ribonuclease Inhibitor 357 509 IPR032675 -
Lsi06g01441 1097 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01441 - - - csv:105436350 2051.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01441 Lsi-Chr6:24936447 Lsi09g00720 Lsi-Chr9:8278768 1.74E-150 dispersed
Lsi06g01441 Lsi-Chr6:24936447 Lsi09g01168 Lsi-Chr9:18893062 3.72E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83745 PF00069 Pkinase 2.70E-42 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01441 Lsi_Chr06 FPKM 12.214424 12.385232 9.002096 8.87292 8.355547 7.06576 8.409087 5.673498 5.351331 6.20586