Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01444 ATGGTTTTCAACTTCAGAGAAGGTGGTAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTAGGCAATATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTCTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCAGATGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCGGATACACCTCTAGTTTTGGATTGTTTAATACTAAGAGTTCTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGATGAAGATCTAGTACATGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGACCAGTATCCCAAGGACTTCAAAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAGTCTCACCACATCCTTCGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGACGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGCAATGGACGGGCAGGAAGCAAAGGGGTCCAATGATCCTCAAGTAGTCAATCATGTAAACCGTAAAGAAGATTGGAAGGAGGACTTCGATCCTCCTGCATTCGAGGATTGTGACGATGGAAATCTTAAGCATGATAAGAAATCAGAGTTTGATGCAGTGAAGGACATTACTGTAGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGATCTTAATGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTCTTGGTTGCTGCCAATGTCCCGACTCATGTGAAAGTCCAGGGGTTAGTGGATGATGCATATGAGAAATTTGAAGATATAGAAGAAAAGGATGATGGAAGAGATAGTACACCTGAGAAATTGGAGAACAAGGTTTTGCAGAAAAAGTTGAGTGCCGATGGTTCTAGACAAAAATCAGAAAAATTGCAAACACCGATTCCCAGGAAACAGCCTATTTCAAGTGGAAAACCGACCACTGATATGGGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCAAAGCCGAATGCAGTTTCTAGGTGGATCCCTCCTAACAAAGGCTCCTATATGAATTCTATGCATGTTTCCTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCAAAGGATGTAAATGCAAATTCCAAAACGAAGTCTGCTGCCACCATTGATTCTCTGGTTGCTACAGATGTTTTTACTGAACGAAAAAACTATAAAGTGGATTCTGTGAGGCCTTCACACTCCGCACCTGGGAACCTCATGCTTGGCCCATCATCTCCAGTTGAGTCAATTGAGGAGACATATTCTTCCTCTGAAACTTTAAAACCATCACATAGTGATGCACAACTTGAAGTACCACCTCCCCCCCTGCCCACAAAGCCTCCATCTCCATATTTACCATCACCCCCCGGGGCAAATGCAATACCTCCACCACCTCCTCCCCCACCACCACCCCCTCCGATGCATGGGGCTCCTCCCCCACCGCCACCCCCCATGCGTGGGGCTCCTCCCCCACCACCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCACCACCGCCCCCTCCTGGTGGAGGTCGTGGAGCACCAGCCCCTCCTAGGCCTCCTGGTGTTGGACCTCCTCCACCACCTTCCATGTATGGAGCCTCACCTCCGCCACCTCCTCCCCCACCACCTTCCATGTACGGAGCCTCACCCCCACCACCCCCTCCAATGCATGGGGCTCCTCCACCACCGCCTCCTCCCATGCATGGGGCTCCTCCCCCACCACCCCCGCCCGGGGGTGGTTGGGGCCCTCCCCCGCCTCCCCCGCCTGGAGGTGGGAGAGCCCCTCCCCCGCCTCCCCCGCCTGGGGGTGGTGGAGCACCAACACCACCTCCCCCTCCTGGTGGAGGTCGTGGAGCACCAGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCACTAGGCGCGAAAGGAGCAAATGCTCCACCTGACCCAAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGATCGACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACAAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAGAGATATGGCGAACCTCAAATTGCACCAGAGTTTGATGTGTCCGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCGGTTGGATCCAAAACTGACAAAGTTCACCTGAGTGAAGAGTTTTTAATTGATGGTTTGTATAGGTGTGACTTAAAGAGCTTTCCTATATCTCCTTCACTTCTCAAAATAACAGAAACTTCATTTGAGTTTAGAAAACCATTAGTTTGTGGAATGCAGAACAGAACTAAAAAGACCAATGTGTTCTTTTGGATGTGCATGTATAATGAGAAAGGAATAAGTCTTAATGTTTTTGTGTATGTCACGGTGACTCAATTGCACAGTATAGAAGTCTTTACCGTGTGGTTAAGTCTTATTCCCTTCATAGTTCAGAACAACTTATTTAAGGATATTGAAGAATTCTGGAAAGCTAAACTATCTCTTCCAGATGTTGCTCGTTCAATTAACTTTATAAGAAAATACTACAAATCACAATTCCAACTTGAAAGCTAG 5055 59.74 MVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQMRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDARDQYPKDFKVEALFLDADAVVPSLTTSFDDEDGNETGAASPDEFFEVEEIFSNAMDGQEAKGSNDPQVVNHVNRKEDWKEDFDPPAFEDCDDGNLKHDKKSEFDAVKDITVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAANVPTHVKVQGLVDDAYEKFEDIEEKDDGRDSTPEKLENKVLQKKLSADGSRQKSEKLQTPIPRKQPISSGKPTTDMGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKSAATIDSLVATDVFTERKNYKVDSVRPSHSAPGNLMLGPSSPVESIEETYSSSETLKPSHSDAQLEVPPPPLPTKPPSPYLPSPPGANAIPPPPPPPPPPPPMHGAPPPPPPPMRGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPGGGRGAPAPPRPPGVGPPPPPSMYGASPPPPPPPPPSMYGASPPPPPPMHGAPPPPPPPMHGAPPPPPPPGGGWGPPPPPPPGGGRAPPPPPPPGGGGAPTPPPPPGGGRGAPAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLSEEFLIDGLYRCDLKSFPISPSLLKITETSFEFRKPLVCGMQNRTKKTNVFFWMCMYNEKGISLNVFVYVTVTQLHSIEVFTVWLSLIPFIVQNNLFKDIEEFWKAKLSLPDVARSINFIRKYYKSQFQLES 1684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24992843 25000278 + Lsi06G014440.1 Lsi06g01444 666174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01444 1684 SMART PTEN_C2_2 138 1527 IPR014020 -
Lsi06g01444 1684 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 141 276 IPR035892 -
Lsi06g01444 1684 ProSiteProfiles C2 tensin-type domain profile. 140 279 IPR014020 -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 453 515 - -
Lsi06g01444 1684 PANTHER - 1 379 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 622 1454 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 574 1485 - -
Lsi06g01444 1684 Gene3D Protein tyrosine phosphatase superfamily 1 144 IPR029021 -
Lsi06g01444 1684 Pfam C2 domain of PTEN tumour-suppressor protein 140 276 IPR014020 -
Lsi06g01444 1684 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1409 1574 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 462 506 - -
Lsi06g01444 1684 Gene3D Formin, FH2 domain 1471 1556 IPR042201 -
Lsi06g01444 1684 PANTHER FORMIN-J 1 379 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 602 618 - -
Lsi06g01444 1684 Gene3D - 145 276 - -
Lsi06g01444 1684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 128 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01444 - - - csv:101215105 1187.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01160 Lsi-Chr6:21828406 Lsi06g01444 Lsi-Chr6:24992843 1.36E-18 dispersed
Lsi02g00091 Lsi-Chr2:754442 Lsi06g01444 Lsi-Chr6:24992843 1.78E-31 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01444 Lsi_Chr06 FPKM 9.212371 9.978799 8.840685 8.940441 6.27668 5.753402 6.050818 11.618151 10.578539 11.828426