Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g01444 | ATGGTTTTCAACTTCAGAGAAGGTGGTAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTAGGCAATATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTCTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCAGATGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCGGATACACCTCTAGTTTTGGATTGTTTAATACTAAGAGTTCTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGATGAAGATCTAGTACATGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGACCAGTATCCCAAGGACTTCAAAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAGTCTCACCACATCCTTCGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGACGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGCAATGGACGGGCAGGAAGCAAAGGGGTCCAATGATCCTCAAGTAGTCAATCATGTAAACCGTAAAGAAGATTGGAAGGAGGACTTCGATCCTCCTGCATTCGAGGATTGTGACGATGGAAATCTTAAGCATGATAAGAAATCAGAGTTTGATGCAGTGAAGGACATTACTGTAGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGATCTTAATGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTCTTGGTTGCTGCCAATGTCCCGACTCATGTGAAAGTCCAGGGGTTAGTGGATGATGCATATGAGAAATTTGAAGATATAGAAGAAAAGGATGATGGAAGAGATAGTACACCTGAGAAATTGGAGAACAAGGTTTTGCAGAAAAAGTTGAGTGCCGATGGTTCTAGACAAAAATCAGAAAAATTGCAAACACCGATTCCCAGGAAACAGCCTATTTCAAGTGGAAAACCGACCACTGATATGGGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCAAAGCCGAATGCAGTTTCTAGGTGGATCCCTCCTAACAAAGGCTCCTATATGAATTCTATGCATGTTTCCTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCAAAGGATGTAAATGCAAATTCCAAAACGAAGTCTGCTGCCACCATTGATTCTCTGGTTGCTACAGATGTTTTTACTGAACGAAAAAACTATAAAGTGGATTCTGTGAGGCCTTCACACTCCGCACCTGGGAACCTCATGCTTGGCCCATCATCTCCAGTTGAGTCAATTGAGGAGACATATTCTTCCTCTGAAACTTTAAAACCATCACATAGTGATGCACAACTTGAAGTACCACCTCCCCCCCTGCCCACAAAGCCTCCATCTCCATATTTACCATCACCCCCCGGGGCAAATGCAATACCTCCACCACCTCCTCCCCCACCACCACCCCCTCCGATGCATGGGGCTCCTCCCCCACCGCCACCCCCCATGCGTGGGGCTCCTCCCCCACCACCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCACCACCGCCCCCTCCTGGTGGAGGTCGTGGAGCACCAGCCCCTCCTAGGCCTCCTGGTGTTGGACCTCCTCCACCACCTTCCATGTATGGAGCCTCACCTCCGCCACCTCCTCCCCCACCACCTTCCATGTACGGAGCCTCACCCCCACCACCCCCTCCAATGCATGGGGCTCCTCCACCACCGCCTCCTCCCATGCATGGGGCTCCTCCCCCACCACCCCCGCCCGGGGGTGGTTGGGGCCCTCCCCCGCCTCCCCCGCCTGGAGGTGGGAGAGCCCCTCCCCCGCCTCCCCCGCCTGGGGGTGGTGGAGCACCAACACCACCTCCCCCTCCTGGTGGAGGTCGTGGAGCACCAGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCACTAGGCGCGAAAGGAGCAAATGCTCCACCTGACCCAAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGATCGACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACAAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAGAGATATGGCGAACCTCAAATTGCACCAGAGTTTGATGTGTCCGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCGGTTGGATCCAAAACTGACAAAGTTCACCTGAGTGAAGAGTTTTTAATTGATGGTTTGTATAGGTGTGACTTAAAGAGCTTTCCTATATCTCCTTCACTTCTCAAAATAACAGAAACTTCATTTGAGTTTAGAAAACCATTAGTTTGTGGAATGCAGAACAGAACTAAAAAGACCAATGTGTTCTTTTGGATGTGCATGTATAATGAGAAAGGAATAAGTCTTAATGTTTTTGTGTATGTCACGGTGACTCAATTGCACAGTATAGAAGTCTTTACCGTGTGGTTAAGTCTTATTCCCTTCATAGTTCAGAACAACTTATTTAAGGATATTGAAGAATTCTGGAAAGCTAAACTATCTCTTCCAGATGTTGCTCGTTCAATTAACTTTATAAGAAAATACTACAAATCACAATTCCAACTTGAAAGCTAG | 5055 | 59.74 | MVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQMRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDARDQYPKDFKVEALFLDADAVVPSLTTSFDDEDGNETGAASPDEFFEVEEIFSNAMDGQEAKGSNDPQVVNHVNRKEDWKEDFDPPAFEDCDDGNLKHDKKSEFDAVKDITVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAANVPTHVKVQGLVDDAYEKFEDIEEKDDGRDSTPEKLENKVLQKKLSADGSRQKSEKLQTPIPRKQPISSGKPTTDMGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKSAATIDSLVATDVFTERKNYKVDSVRPSHSAPGNLMLGPSSPVESIEETYSSSETLKPSHSDAQLEVPPPPLPTKPPSPYLPSPPGANAIPPPPPPPPPPPPMHGAPPPPPPPMRGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPGGGRGAPAPPRPPGVGPPPPPSMYGASPPPPPPPPPSMYGASPPPPPPMHGAPPPPPPPMHGAPPPPPPPGGGWGPPPPPPPGGGRAPPPPPPPGGGGAPTPPPPPGGGRGAPAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLSEEFLIDGLYRCDLKSFPISPSLLKITETSFEFRKPLVCGMQNRTKKTNVFFWMCMYNEKGISLNVFVYVTVTQLHSIEVFTVWLSLIPFIVQNNLFKDIEEFWKAKLSLPDVARSINFIRKYYKSQFQLES | 1684 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24992843 | 25000278 | + | Lsi06G014440.1 | Lsi06g01444 | 666174 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g01444 | 1684 | SMART | PTEN_C2_2 | 138 | 1527 | IPR014020 | - | |
| Lsi06g01444 | 1684 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 141 | 276 | IPR035892 | - | |
| Lsi06g01444 | 1684 | ProSiteProfiles | C2 tensin-type domain profile. | 140 | 279 | IPR014020 | - | |
| Lsi06g01444 | 1684 | MobiDBLite | consensus disorder prediction | 453 | 515 | - | - | |
| Lsi06g01444 | 1684 | PANTHER | - | 1 | 379 | - | - | |
| Lsi06g01444 | 1684 | MobiDBLite | consensus disorder prediction | 622 | 1454 | - | - | |
| Lsi06g01444 | 1684 | MobiDBLite | consensus disorder prediction | 574 | 1485 | - | - | |
| Lsi06g01444 | 1684 | Gene3D | Protein tyrosine phosphatase superfamily | 1 | 144 | IPR029021 | - | |
| Lsi06g01444 | 1684 | Pfam | C2 domain of PTEN tumour-suppressor protein | 140 | 276 | IPR014020 | - | |
| Lsi06g01444 | 1684 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 1409 | 1574 | - | - | |
| Lsi06g01444 | 1684 | MobiDBLite | consensus disorder prediction | 462 | 506 | - | - | |
| Lsi06g01444 | 1684 | Gene3D | Formin, FH2 domain | 1471 | 1556 | IPR042201 | - | |
| Lsi06g01444 | 1684 | PANTHER | FORMIN-J | 1 | 379 | - | - | |
| Lsi06g01444 | 1684 | MobiDBLite | consensus disorder prediction | 602 | 618 | - | - | |
| Lsi06g01444 | 1684 | Gene3D | - | 145 | 276 | - | - | |
| Lsi06g01444 | 1684 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 15 | 128 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g01160 | Lsi-Chr6:21828406 | Lsi06g01444 | Lsi-Chr6:24992843 | 1.36E-18 | dispersed | |
| Lsi02g00091 | Lsi-Chr2:754442 | Lsi06g01444 | Lsi-Chr6:24992843 | 1.78E-31 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g01444 | - | - | csv:101215105 | 1187.56 |