Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01444 ATGGTTTTCAACTTCAGAGAAGGTGGTAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTAGGCAATATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTCTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCAGATGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCGGATACACCTCTAGTTTTGGATTGTTTAATACTAAGAGTTCTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGATGAAGATCTAGTACATGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGACCAGTATCCCAAGGACTTCAAAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAGTCTCACCACATCCTTCGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGACGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGCAATGGACGGGCAGGAAGCAAAGGGGTCCAATGATCCTCAAGTAGTCAATCATGTAAACCGTAAAGAAGATTGGAAGGAGGACTTCGATCCTCCTGCATTCGAGGATTGTGACGATGGAAATCTTAAGCATGATAAGAAATCAGAGTTTGATGCAGTGAAGGACATTACTGTAGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGATCTTAATGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTCTTGGTTGCTGCCAATGTCCCGACTCATGTGAAAGTCCAGGGGTTAGTGGATGATGCATATGAGAAATTTGAAGATATAGAAGAAAAGGATGATGGAAGAGATAGTACACCTGAGAAATTGGAGAACAAGGTTTTGCAGAAAAAGTTGAGTGCCGATGGTTCTAGACAAAAATCAGAAAAATTGCAAACACCGATTCCCAGGAAACAGCCTATTTCAAGTGGAAAACCGACCACTGATATGGGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCAAAGCCGAATGCAGTTTCTAGGTGGATCCCTCCTAACAAAGGCTCCTATATGAATTCTATGCATGTTTCCTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCAAAGGATGTAAATGCAAATTCCAAAACGAAGTCTGCTGCCACCATTGATTCTCTGGTTGCTACAGATGTTTTTACTGAACGAAAAAACTATAAAGTGGATTCTGTGAGGCCTTCACACTCCGCACCTGGGAACCTCATGCTTGGCCCATCATCTCCAGTTGAGTCAATTGAGGAGACATATTCTTCCTCTGAAACTTTAAAACCATCACATAGTGATGCACAACTTGAAGTACCACCTCCCCCCCTGCCCACAAAGCCTCCATCTCCATATTTACCATCACCCCCCGGGGCAAATGCAATACCTCCACCACCTCCTCCCCCACCACCACCCCCTCCGATGCATGGGGCTCCTCCCCCACCGCCACCCCCCATGCGTGGGGCTCCTCCCCCACCACCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCCCCACCGCCCCCCCCCATGCACGGGGCTCCTCCACCACCGCCCCCTCCTGGTGGAGGTCGTGGAGCACCAGCCCCTCCTAGGCCTCCTGGTGTTGGACCTCCTCCACCACCTTCCATGTATGGAGCCTCACCTCCGCCACCTCCTCCCCCACCACCTTCCATGTACGGAGCCTCACCCCCACCACCCCCTCCAATGCATGGGGCTCCTCCACCACCGCCTCCTCCCATGCATGGGGCTCCTCCCCCACCACCCCCGCCCGGGGGTGGTTGGGGCCCTCCCCCGCCTCCCCCGCCTGGAGGTGGGAGAGCCCCTCCCCCGCCTCCCCCGCCTGGGGGTGGTGGAGCACCAACACCACCTCCCCCTCCTGGTGGAGGTCGTGGAGCACCAGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCACTAGGCGCGAAAGGAGCAAATGCTCCACCTGACCCAAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGATCGACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACAAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAGAGATATGGCGAACCTCAAATTGCACCAGAGTTTGATGTGTCCGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCGGTTGGATCCAAAACTGACAAAGTTCACCTGAGTGAAGAGTTTTTAATTGATGGTTTGTATAGGTGTGACTTAAAGAGCTTTCCTATATCTCCTTCACTTCTCAAAATAACAGAAACTTCATTTGAGTTTAGAAAACCATTAGTTTGTGGAATGCAGAACAGAACTAAAAAGACCAATGTGTTCTTTTGGATGTGCATGTATAATGAGAAAGGAATAAGTCTTAATGTTTTTGTGTATGTCACGGTGACTCAATTGCACAGTATAGAAGTCTTTACCGTGTGGTTAAGTCTTATTCCCTTCATAGTTCAGAACAACTTATTTAAGGATATTGAAGAATTCTGGAAAGCTAAACTATCTCTTCCAGATGTTGCTCGTTCAATTAACTTTATAAGAAAATACTACAAATCACAATTCCAACTTGAAAGCTAG 5055 59.74 MVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQMRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDARDQYPKDFKVEALFLDADAVVPSLTTSFDDEDGNETGAASPDEFFEVEEIFSNAMDGQEAKGSNDPQVVNHVNRKEDWKEDFDPPAFEDCDDGNLKHDKKSEFDAVKDITVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAANVPTHVKVQGLVDDAYEKFEDIEEKDDGRDSTPEKLENKVLQKKLSADGSRQKSEKLQTPIPRKQPISSGKPTTDMGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKSAATIDSLVATDVFTERKNYKVDSVRPSHSAPGNLMLGPSSPVESIEETYSSSETLKPSHSDAQLEVPPPPLPTKPPSPYLPSPPGANAIPPPPPPPPPPPPMHGAPPPPPPPMRGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPMHGAPPPPPPPGGGRGAPAPPRPPGVGPPPPPSMYGASPPPPPPPPPSMYGASPPPPPPMHGAPPPPPPPMHGAPPPPPPPGGGWGPPPPPPPGGGRAPPPPPPPGGGGAPTPPPPPGGGRGAPAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLSEEFLIDGLYRCDLKSFPISPSLLKITETSFEFRKPLVCGMQNRTKKTNVFFWMCMYNEKGISLNVFVYVTVTQLHSIEVFTVWLSLIPFIVQNNLFKDIEEFWKAKLSLPDVARSINFIRKYYKSQFQLES 1684
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24992843 25000278 + Lsi06G014440.1 Lsi06g01444 666174
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01444 1684 SMART PTEN_C2_2 138 1527 IPR014020 -
Lsi06g01444 1684 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 141 276 IPR035892 -
Lsi06g01444 1684 ProSiteProfiles C2 tensin-type domain profile. 140 279 IPR014020 -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 453 515 - -
Lsi06g01444 1684 PANTHER - 1 379 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 622 1454 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 574 1485 - -
Lsi06g01444 1684 Gene3D Protein tyrosine phosphatase superfamily 1 144 IPR029021 -
Lsi06g01444 1684 Pfam C2 domain of PTEN tumour-suppressor protein 140 276 IPR014020 -
Lsi06g01444 1684 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1409 1574 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 462 506 - -
Lsi06g01444 1684 Gene3D Formin, FH2 domain 1471 1556 IPR042201 -
Lsi06g01444 1684 PANTHER FORMIN-J 1 379 - -
Lsi06g01444 1684 MobiDBLite consensus disorder prediction 602 618 - -
Lsi06g01444 1684 Gene3D - 145 276 - -
Lsi06g01444 1684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 128 IPR029021 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01160 Lsi-Chr6:21828406 Lsi06g01444 Lsi-Chr6:24992843 1.36E-18 dispersed
Lsi02g00091 Lsi-Chr2:754442 Lsi06g01444 Lsi-Chr6:24992843 1.78E-31 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01444 - - csv:101215105 1187.56