Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01445 ATGGACTTGGCAAAGGCTGATGTAATGAAAATTTTGAATAATATTTATATTTTTATGCAGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTTACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTGGCAATGGATGAGTCAGTTTTAGACGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCCACAAAGGAGGAGATGGAACTTCTGAAGGGATACACTGGTGATATGGATAACCTTGGAAAGTGTGAACGGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACAGCAAGGGGTAAGGATAAACTTGAGTTTTACAGTCACGTCGGACTAACTAAAAGTGCTAAATTTATTTTTCTTATTATTCTTAGTGCTCTAGTTTCTAATTCACGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCATTATCTTTGCAAGGTCCTCGCTTCAAAGATGCCAGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTTGAGCCAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGCTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAGTTTTTCGCAAGACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGGCCTCGGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTCGTGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGAGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 1155 39.74 MDLAKADVMKILNNIYIFMQIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCERYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGKDKLEFYSHVGLTKSAKFIFLIILSALVSNSRSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKMPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKEFIAIAETEVASVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAEKEAEMENAKGISLTKKSVK 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25001154 25009490 + Lsi06G014450.1 Lsi06g01445 666175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01445 384 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 372 IPR015425 -
Lsi06g01445 384 SUPERFAMILY Formin homology 2 domain (FH2 domain) 21 373 - -
Lsi06g01445 384 Coils Coil 347 376 - -
Lsi06g01445 384 Pfam Formin Homology 2 Domain 193 346 IPR015425 -
Lsi06g01445 384 Pfam Formin Homology 2 Domain 21 164 IPR015425 -
Lsi06g01445 384 MobiDBLite consensus disorder prediction 359 374 - -
Lsi06g01445 384 Coils Coil 253 273 - -
Lsi06g01445 384 MobiDBLite consensus disorder prediction 359 384 - -
Lsi06g01445 384 SMART it6_source 3 382 IPR015425 -
Lsi06g01445 384 PANTHER FORMIN-J 20 377 - -
Lsi06g01445 384 Gene3D Formin, FH2 domain 18 379 IPR042201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01445 - - - cmo:103494331 595.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00091 Lsi06g01445 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01445 Lsi-Chr6:25001154 Lsi10g00514 Lsi-Chr10:7336609 8.98E-20 dispersed
Lsi06g01445 Lsi-Chr6:25001154 Lsi02g00091 Lsi-Chr2:754442 1.28E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01445 Lsi_Chr06 FPKM 2.888312 0.0 4.324443 0.0 0.0 2.501023 0.0 4.233595 2.32123 2.653574