Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01445 ATGGACTTGGCAAAGGCTGATGTAATGAAAATTTTGAATAATATTTATATTTTTATGCAGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTTACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTGGCAATGGATGAGTCAGTTTTAGACGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCCACAAAGGAGGAGATGGAACTTCTGAAGGGATACACTGGTGATATGGATAACCTTGGAAAGTGTGAACGGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACAGCAAGGGGTAAGGATAAACTTGAGTTTTACAGTCACGTCGGACTAACTAAAAGTGCTAAATTTATTTTTCTTATTATTCTTAGTGCTCTAGTTTCTAATTCACGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCATTATCTTTGCAAGGTCCTCGCTTCAAAGATGCCAGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTTGAGCCAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGCTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAGTTTTTCGCAAGACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGGCCTCGGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTCGTGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGAGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 1155 39.74 MDLAKADVMKILNNIYIFMQIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCERYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGKDKLEFYSHVGLTKSAKFIFLIILSALVSNSRSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKMPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKEFIAIAETEVASVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAEKEAEMENAKGISLTKKSVK 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25001154 25009490 + Lsi06G014450.1 Lsi06g01445 666175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01445 384 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 372 IPR015425 -
Lsi06g01445 384 SUPERFAMILY Formin homology 2 domain (FH2 domain) 21 373 - -
Lsi06g01445 384 Coils Coil 347 376 - -
Lsi06g01445 384 Pfam Formin Homology 2 Domain 193 346 IPR015425 -
Lsi06g01445 384 Pfam Formin Homology 2 Domain 21 164 IPR015425 -
Lsi06g01445 384 MobiDBLite consensus disorder prediction 359 374 - -
Lsi06g01445 384 Coils Coil 253 273 - -
Lsi06g01445 384 MobiDBLite consensus disorder prediction 359 384 - -
Lsi06g01445 384 SMART it6_source 3 382 IPR015425 -
Lsi06g01445 384 PANTHER FORMIN-J 20 377 - -
Lsi06g01445 384 Gene3D Formin, FH2 domain 18 379 IPR042201 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00091 Lsi06g01445 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01445 Lsi-Chr6:25001154 Lsi10g00514 Lsi-Chr10:7336609 8.98E-20 dispersed
Lsi06g01445 Lsi-Chr6:25001154 Lsi02g00091 Lsi-Chr2:754442 1.28E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01445 - - cmo:103494331 595.89