Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01446 ATGGGAGGAGAATTTTCTAGGGCTCCAAACCCTCGAATCCCCTTCTCCTCCCTTCTCCTCCTCCTCTCTCTCTGCCTCTCCGCCGCAATAAACCCCTCATTCCCTTCCTTCTCCCCTCGCGACGCTTATTTGATCGACTGCGGCTCGCCCACCCAAACCCGTCTCGACGACGGCCGGATTTTCAAATCCGATCGCGAATCCACTTCTCTCCTTTCCACCGAAGAAGACGTTCAGACCTCCGTCGATTCCATTCCTCCAAACGCCGCCGTTTCGCCTCTCTCTTTTTGGTCATTACCTCTATTTCGCTCCGCCAGAATTTTCCCCGACGATTCCACCTACACTTTCTTCATTTCTCAGCCCGGCCGCCATTGGATCCGCCTCTACTTTTACCCTATTCCTCATCCTAATTACAATCTCTCCGATTCCGTTTTCACTGTCACCACCGACACCTTCGTCCTCCTCCATGATTTCTCAATCAAACCCAATCCCAAAATCGTCTTCAAGGAATACCTAATCAACATTACCACCGATCGATTCTCCCTCCAGTTCAAACCTAAGAAGAATTCCTTCGCCTTCGTCAATGCCATTGAAATCGTCTCCGCTCCAGATACTCTGTTTTCCGATTCCGCCAACTCTGTTTCTCCGGTGGGATTTTTCAACGGATTGTCGAATATTGCTCTGCAAATTTGCTACCGTGTTAATGTGGGAGGCCCTGAACTTGTTCCTAAAAACGATACGCTGTCAAGAACATGGGAAACAGATAATGCTTACAACAAATTTCCACAGGGTTCTAAGAATGTTTCTGTGGCTTTGGACTCCATTAGATACCCTGGAGATGACGTGACTCCATTGATTGCTCCTAATTGGGTTTATGCAACTGCAGAGGATCTTCAAGATCCTGAAACGATGCAAGTAAACTTCAATATGAGTTGGAGTTTCAATGTGGAACCGAGTTACTCGTATTTGATCAGACTCCATTTCTGTGATATTGTGAGCAAAGTCCTCAATAATTTATACTTCAATGTCTACATCAATGGGATGATGGGTATTGCAGATCTTGATCTTTCTCAACTCACCGGTGATCTTTCCACTCCATACTATAGAGACCTTGTTCTCAATGCCTCTGACATCAAGAACAACACCATCATGATTCAGGTTGGTCCATCAAATTTGGATTCAGGGCTTCAAGATGCAATTCTGAATGGAGTGGAAATTATGAAGATGAATAACGACGCACAAAGCTTGGATGGTTTGTTTTCAGTGGATGGGACATACATGGGAGGCTCAAGATTTAGCACAATGAAGATTATTGCTTCTATAGGACTTGGAATGGCAGCCATTGCCATTGTATTTGTTGTAATAATGTTCTTGAGATGGCAGAAAAGGCCTTTAGGATGGGAGAAGAAGAACAGTTTCTCTTCATGGCTTCTTCCTTTGAATTCAACTCAAACTGCCAGTTTCTTCTCTTCAAAAAGCAGCTCCAGAAGATCATCAACTGTTTTTAGCTCTCGAAGGAGCAAGACTGGCTTCTCAACCATTTACTCTAATGTCGGTCTTGGTCGTTTCTTCTCCCTCAATGAGTTACAGGTTGCTACCCAGAATTTCGAGGAGAAAGCAGTGATCGGCGTTGGTGGATTCGGCAAAGTCTACGTCGGAGCATTAGAAGATGGAACCAAAGTGGCGATTAAACGTGGAAACCCTAGTTCTGATCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTCTCTAAACTCCGCCATCGCCATCTCGTTTCTCTAATCGGTTACTGCGACGAGCAGTCCGAGATGATTCTGGTTTACGAATTCATGGCCAATGGCCCATTTCGAGACCATTTGTATGGCTCTAATCTCCCTCCTTTGTCCTGGAAACAGAGACTCGAAATCTGTATCGGCGCTGCCCGTGGCCTTCACTATCTCCACACTGGTGCGGCTCAGGGCATAATCCACCGTGATGTCAAAACCACTAACATTCTTCTTGACGAAAATTTTGTTGCCAAAGTTGCTGATTTTGGGCTTTCCAAAGCTGGCCCATCCTTGGAACAGACCCATGTGAGCACTGCAGTCAAAGGAAGTTTTGGTTACCTTGATCCTGAGTACTTCAGAAGACAACAACTCACTGAGAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGCGCAAGACAAGTCATCAATCCCACATTGCCGCGTGAGCAGGTTCGTAATCTAACTCTTCTTCCACCCCGACCCAAAAAGGGGTCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGTTGATAGACCAAGCATGGGAGATGTGCTATGGAACTTAGAATACGCTTTGCAGCTACAAGAGGCAGTATCAGAGCTCGAGGACCCTGAAGAAGACAAATGCGAAGGCCTTGTGGCTTTGGACAAACCAAATGACAATGAACCAAAAGGAGGTACAAGTGCTTCTGTAAGTGATGATATTTCTGAAGTTTCAGTTAGTGCTCCCTTGTTTTCAGAAGTTCAAAATTTTCAGGGAAGA 2562 45.28 MGGEFSRAPNPRIPFSSLLLLLSLCLSAAINPSFPSFSPRDAYLIDCGSPTQTRLDDGRIFKSDRESTSLLSTEEDVQTSVDSIPPNAAVSPLSFWSLPLFRSARIFPDDSTYTFFISQPGRHWIRLYFYPIPHPNYNLSDSVFTVTTDTFVLLHDFSIKPNPKIVFKEYLINITTDRFSLQFKPKKNSFAFVNAIEIVSAPDTLFSDSANSVSPVGFFNGLSNIALQICYRVNVGGPELVPKNDTLSRTWETDNAYNKFPQGSKNVSVALDSIRYPGDDVTPLIAPNWVYATAEDLQDPETMQVNFNMSWSFNVEPSYSYLIRLHFCDIVSKVLNNLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNTIMIQVGPSNLDSGLQDAILNGVEIMKMNNDAQSLDGLFSVDGTYMGGSRFSTMKIIASIGLGMAAIAIVFVVIMFLRWQKRPLGWEKKNSFSSWLLPLNSTQTASFFSSKSSSRRSSTVFSSRRSKTGFSTIYSNVGLGRFFSLNELQVATQNFEEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEFMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAGPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARQVINPTLPREQVRNLTLLPPRPKKGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPEEDKCEGLVALDKPNDNEPKGGTSASVSDDISEVSVSAPLFSEVQNFQGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25020241 25026188 - Lsi06G014460.1 Lsi06g01446 666176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01446 854 SUPERFAMILY Protein kinase-like (PK-like) 508 789 IPR011009 -
Lsi06g01446 854 PANTHER OS03G0759600 PROTEIN 32 745 - -
Lsi06g01446 854 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Lsi06g01446 854 CDD STKc_IRAK 541 789 - -
Lsi06g01446 854 ProSiteProfiles Protein kinase domain profile. 535 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01446 854 PANTHER OS03G0759600 PROTEIN 757 832 - -
Lsi06g01446 854 Pfam Protein tyrosine and serine/threonine kinase 538 785 IPR001245 GO:0004672|GO:0006468
Lsi06g01446 854 MobiDBLite consensus disorder prediction 802 835 - -
Lsi06g01446 854 PANTHER OS07G0166700 PROTEIN 32 745 IPR045272 GO:0004714|GO:0006468
Lsi06g01446 854 PANTHER OS07G0166700 PROTEIN 757 832 IPR045272 GO:0004714|GO:0006468
Lsi06g01446 854 Pfam Malectin-like domain 45 408 IPR024788 -
Lsi06g01446 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Lsi06g01446 854 Gene3D Transferase(Phosphotransferase) domain 1 611 811 - -
Lsi06g01446 854 Gene3D Phosphorylase Kinase; domain 1 496 610 - -
Lsi06g01446 854 Gene3D - 41 202 - -
Lsi06g01446 854 Gene3D - 225 411 - -
Lsi06g01446 854 SMART serkin_6 535 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02766 Lsi-Chr2:33926792 Lsi06g01446 Lsi-Chr6:25020241 0 dispersed
Lsi04g01289 Lsi-Chr4:20305282 Lsi06g01446 Lsi-Chr6:25020241 0 dispersed
Lsi05g01200 Lsi-Chr5:19858103 Lsi06g01446 Lsi-Chr6:25020241 0 dispersed
Lsi06g01446 Lsi-Chr6:25020241 Lsi11g00433 Lsi-Chr11:4550758 8.04E-176 dispersed
Lsi09g01789 Lsi-Chr9:26619696 Lsi06g01446 Lsi-Chr6:25020241 7.84E-58 dispersed
Lsi06g01446 Lsi-Chr6:25020241 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83746 PF12819 Malectin_like 5.30E-36 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01446 - - bhj:120071221 1503.03