Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01447 ATGTCCGTTGTGCAGAACAGTTCTTTTTATCAGTTCAAGAACATGTGCAATCAGTTGGTTTTTACCAGTGTTACACTGAGCAACATTATACAGAAGAACTTTCCAGAGGAATATGCTGAAAGAAAGTCGGAACATGATGGTTTGACAAATTTTGGTGTCGATTTAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTTCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCAGGAGGGTAATGGAAGGCAATCATCGAATGGGAATGGTTATTGTGGATTCTACAACTGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACGGAGTGTGAGCCACTTGCGGACGGACGTTTTTATCTAGAGATTGAAAGTCGTCGAAGATTTCGCATTATTCGATCTTGGGACCAAGATGGGTATCGAGTGGGAGAGATCGAATGGGTCAATGATATAACTCCCCCAGAAGGGACAACAGAGCGGGCAGAACTGCAGGAAATGACAATTAACGCAGCAGAGTACGCTCAGTCATGGATAAGGAGGGCAAAAGAAGCATCTAGACGAGATCCGATAAAACGGGATCGACTTCTTAATGTGGAAGCGATGATGCCCTCATCACGAGATCCTGAACGGTTTAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCTCTGGAAAGATTGGAACTTCTACGAATGACAGATACAAAAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGCTGTCAGATGCAATGA 789 43.47 MSVVQNSSFYQFKNMCNQLVFTSVTLSNIIQKNFPEEYAERKSEHDGLTNFGVDLMPLFVMDVVIPCQKFPLHIFEPRYRLMVRRVMEGNHRMGMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRIIRSWDQDGYRVGEIEWVNDITPPEGTTERAELQEMTINAAEYAQSWIRRAKEASRRDPIKRDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTKERIRRGLVYLKAEEQGCQMQ 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25027813 25036835 - Lsi06G014470.1 Lsi06g01447 666177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01447 262 Gene3D - 54 156 IPR046336 -
Lsi06g01447 262 ProSiteProfiles Lon N-terminal domain profile. 53 254 IPR003111 -
Lsi06g01447 262 Pfam ATP-dependent protease La (LON) substrate-binding domain 56 253 IPR003111 -
Lsi06g01447 262 SMART lon_5 55 254 IPR003111 -
Lsi06g01447 262 SUPERFAMILY PUA domain-like 56 252 IPR015947 -
Lsi06g01447 262 PANTHER RING FINGER PROTEIN 127 22 255 - -
Lsi06g01447 262 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 22 255 - -
Lsi06g01447 262 Gene3D - 195 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01447 - - - csv:101204351 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01708 Lsi-Chr4:24427288 Lsi06g01447 Lsi-Chr6:25027813 5.02E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01447 Lsi_Chr06 FPKM 12.461864 13.664474 10.389004 10.431754 6.269103 5.698802 5.984926 13.670501 14.030697 14.277839