Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01450 ATGGTTCAAAAGAACTACATTGGTTGGGAGGCTTCTCAGACACTCTTCTTGGATTTCGCCTTTTTCTTTTTAACCAAATCTTTTTTGCAAGTGTGTATAGGGCGGATATGGGCAGGCCATAACATACTCAGATTTGACTGTGCGCGAATAAGGGAGGCTTTTGCAGAAATTGGTGTGCCAGCACCAGAGCCAAAAGGTACAATTGATTCATTGGCATTGTTGACTCAAAGGTTTGGAAGGAGAGCTGGCGACATGAAGGAATCAAGTCTACCCGAAGTTTTCCCGGAGAACAGTTGGGTTTCTCCAAATGCTGTTACTAGGTGTCGTGCTGCAAAATCATCACCACAGGGGAATAATTCGAATAATAATACTCACTCATCAAGTTCAAGGATTGGTGGTAATCCCATATCTCTAACAGATCAACAAGGGGAAACTCATCCGATACTATCTCTCGTAACTTGCAGCTCTGGGGACGGAGCCTCAGATCTGGCTGAATCTAGTGCAACTGAATCAGATTCTTTTAACATGCACACTCTCGGCGACCAAATAACAGGTGAATCACTTGAAACAGATATCAGCATGGAAGAAGAACAGGCCTCAGCATCTACTGAAGCATCTCCCTCAGAGGATACTTCCACAAGCCTCGGCGCTACTACTGAATTTTTGGAGCCTGATCAGGTGTCTGTTTCGTTCATCACTGCATCTTTCGTTCCATTTTTTCGTGGGAGCCAAAGAATACAATTATCGCACAAAGATGACTGTTTACAGCTTCTATGTAATAATCTGAGAGTTCGGTTTGGCATAAGCACGAAATTCACTGATTACGCTGGCCGTCCGAGGTTGAGTTTTGTGGTTGATGTACCACCAAGTTTATGCATGGTTCTTGAAGCATCTGATGGTGTGGCTCAGAGATTATTCTCTGATTCCGGCAGCGGTTCCGAATGGAGGCCTGTGGTGCTGAGAAAGAATGGTTATTTCAACTACCCGACGATGAGATTACACATTCCAACTGCAGTAAGTGGAGATACGGCAGTTTATGCTACAGAGATGTACCAAAAAGAATCATCAGGCGCTGCACAAAGGCTGATATTCAGTAAATTCGACGCTGCAGAGCTTGATAGCTTGATCAAACCTGGAGCCATCTTAGATGCATTTATTTCCTTGGATACATACGACTATCAACAGAGTGCAGGCATTAGATTGACTACGAACGGCGAGCCTCCGACGCGCAGACGGGAACGACCCACGCAGGTAGACGCCGATTGTGCTTCTCCGATGACCCATTTACTTGCTAGCGAGTTCAGACCCACGACTTTGTGCCTGAGATTGGCGGCGTTTTCACACACGCAATCTTCTCCATCTCCGGAGACTCTACGAACCCACCTGCGAAAGCTAGGTAGTAGGGAGGCTGGCGAGCAAAATCAGAGAAATGAAAACGCCTTTTCTTTGAGTAGCGTGTTTTCTCTATGCATTGTAATGCATGCACGCCATATGTTCGATGAAATGTCGCTGAGAAGATGCGTCTCATTGTTGAAGTTAAAATGGGATAGCTTCATTGTGCAATCCTTCTATACGCGGCATCGCTTTTGTTCCCTTCCTTCCACCATAAACAATGGAGCTTCTGTATTAAAACTGTGTGAAGTGATTTCGTGCACAATCGGTGGGTTAGATGAATTGGAATCCAGTCTGAACAAATGTACAATATCATTGACATCTTCACTCGTCACCCAGGTTATTGATTCTAGCAAAAACGAAGCTCCCACTAGAAGATTGCTTAGGTTTTTCTTGTGGTCTCTCAAGAAGTTAAACCACGATTTAGAAGATGAAGATTTCAATTATGCCATCCGCTTCTTTGCTCAGAAGAAGGACTACACTGCCATTGATATTTTACTTTCTAATCTTAAGAAAGCCGACTGCGCAATGGACGGCCAGACCTTCTGTTTTGTGGCTGAGGCTTTTGTCAAAATGGATAGAGAAGATGAAGCATTGGGTCTGTTCAAGAACTTGGATAAGTACAAATGCCCACATGACCAATTTACTGTCACTGCAATTATTACTGCTCTTTGTGCAAAAGGGCATGCTAAAAGAGCAGAAGGGGTTGTCTTGCATCACAAGGACAAGATTTCTAGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCTATTAAGAAGAACACAAAAGAAGCAAGAAGAATACTCAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTTTGCTACAACACTTTCCTCAAGTGTCTTTGTGAGCAGAATCTTGAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCCTTGAATGTGATGATGGAAATGAGATCCTACAAAATTGCTCCCAACTCAATCAGTTATAATATATTGTTATCATGTCTGGGTAGAACTAGGAGAGTGAAGGAATCATGTACAATCCTTGAGACAATGAAACGATCTGGTTGTCGACCCGATTGTGTAAGCTATTATCTTGTGGCAAGAGTGTTGTTCTTGACTGGAAGATTTGGGAAAGGGCGCAGAATTGTGGACGAGATGATTGAAGAAGAAGGGTTGATCCCGGATCGAAAATTCTACTACGATTTGATTGGTGTTCTGTGTGGTGTTGAGAGAACAAATTATGCACTTGAGCTTTTTGAAAAAATGAAGAGAAGCTCATTGGAGGGTTATGGGCCAGTTTATGATGTGCTTATACCAAAGCTTTGTAGAGGAGGTGATTTTGAAATGGGCAGGAAACTGTGGGAAGAGGCCATGGCTATGGGTGTTATGCTTAGCTGCTCAAGTGAGGTTTTGGATCCTTCAATCACAAAGGTTTTCAAGCCAACAAGAAAGATTGAGAATAAAATTCTTGAAGAATGCAATAGAGCTGAGAAGCAGAACAAAGCTGCAACTGACAAACCAAAAGAAAAGAGAGAGAGAAGTAAGAATCTGTCTTGGAAATAA 2958 42.93 MVQKNYIGWEASQTLFLDFAFFFLTKSFLQVCIGRIWAGHNILRFDCARIREAFAEIGVPAPEPKGTIDSLALLTQRFGRRAGDMKESSLPEVFPENSWVSPNAVTRCRAAKSSPQGNNSNNNTHSSSSRIGGNPISLTDQQGETHPILSLVTCSSGDGASDLAESSATESDSFNMHTLGDQITGESLETDISMEEEQASASTEASPSEDTSTSLGATTEFLEPDQVSVSFITASFVPFFRGSQRIQLSHKDDCLQLLCNNLRVRFGISTKFTDYAGRPRLSFVVDVPPSLCMVLEASDGVAQRLFSDSGSGSEWRPVVLRKNGYFNYPTMRLHIPTAVSGDTAVYATEMYQKESSGAAQRLIFSKFDAAELDSLIKPGAILDAFISLDTYDYQQSAGIRLTTNGEPPTRRRERPTQVDADCASPMTHLLASEFRPTTLCLRLAAFSHTQSSPSPETLRTHLRKLGSREAGEQNQRNENAFSLSSVFSLCIVMHARHMFDEMSLRRCVSLLKLKWDSFIVQSFYTRHRFCSLPSTINNGASVLKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHDLEDEDFNYAIRFFAQKKDYTAIDILLSNLKKADCAMDGQTFCFVAEAFVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEQNLEKNPSGLVPEALNVMMEMRSYKIAPNSISYNILLSCLGRTRRVKESCTILETMKRSGCRPDCVSYYLVARVLFLTGRFGKGRRIVDEMIEEEGLIPDRKFYYDLIGVLCGVERTNYALELFEKMKRSSLEGYGPVYDVLIPKLCRGGDFEMGRKLWEEAMAMGVMLSCSSEVLDPSITKVFKPTRKIENKILEECNRAEKQNKAATDKPKEKRERSKNLSWK 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25057733 25063712 - Lsi06G014500.1 Lsi06g01450 666180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01450 985 MobiDBLite consensus disorder prediction 108 141 - -
Lsi06g01450 985 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 527 975 - -
Lsi06g01450 985 TIGRFAM PPR: pentatricopeptide repeat domain 791 825 IPR002885 -
Lsi06g01450 985 Coils Coil 951 971 - -
Lsi06g01450 985 Gene3D Tetratricopeptide repeat domain 768 984 IPR011990 GO:0005515
Lsi06g01450 985 Gene3D Tetratricopeptide repeat domain 580 767 IPR011990 GO:0005515
Lsi06g01450 985 MobiDBLite consensus disorder prediction 159 178 - -
Lsi06g01450 985 Pfam PPR repeat family 788 828 IPR002885 -
Lsi06g01450 985 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 527 975 - -
Lsi06g01450 985 Pfam PPR repeat 867 890 IPR002885 -
Lsi06g01450 985 MobiDBLite consensus disorder prediction 193 215 - -
Lsi06g01450 985 Pfam Pentatricopeptide repeat domain 716 757 IPR002885 -
Lsi06g01450 985 MobiDBLite consensus disorder prediction 961 985 - -
Lsi06g01450 985 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 789 823 IPR002885 -
Lsi06g01450 985 MobiDBLite consensus disorder prediction 400 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01450 - - - bhj:120070820 930.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01403 Lsi-Chr6:24580561 Lsi06g01450 Lsi-Chr6:25057733 2.45E-42 dispersed
Lsi06g01450 Lsi-Chr6:25057733 Lsi04g01777 Lsi-Chr4:24980393 9.70E-06 dispersed
Lsi06g01450 Lsi-Chr6:25057733 Lsi02g00346 Lsi-Chr2:2942389 3.01E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g581 . . Bda06g00537 . . . . . . . Cma10g00204 Cma11g00131 Car10g00193 Car11g00165 Sed08g0233 . Cpe04g01486 Bhi02g00300 Tan09g2098 Cmetu02g0126 . Hepe09g0103 . . Cla06g01577 Cam06g1745 Cec06g1803 Cco06g1805 Clacu06g1711 Cmu06g1655 Cre06g2468 . . . . . . . . . Blo15g00320 . . . . . . . Cmo10g00221 Cmo11g00181 . . . . . Cpe18g00783 . . . . . . . . . . . . . . Lsi06g01450 Csa01g00252 Chy02g02482 Cme02g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010499 1 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01450 Lsi_Chr06 FPKM 14.108772 13.239177 0.452335 0.766155 3.068141 2.104686 3.16047 0.125277 0.265423 0.167787
Lsi06g01450 Lsi_Chr00 FPKM 11.830189 10.900874 0.77539 0.983319 4.475082 2.526408 4.842604 0.224554 0.237879 0.188843