Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01458 | ATGGCGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTGATTCTGCTCTTGGTAACAACAATGGAGGAGGTTGGATTGATGCGCACGCCACATTCTACGGTGGGGGCGACGCTGCTGGTACAATGGGAGGGGCTTGTGGATATGGAAATCTGTATAGCCAGGGATATGGAACGAACACAGCAGCTCTGAGTACAGCTTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAAATGTGTAAATGATGCAAAATGGTGTCTTCCAAAGTCCATTGTCGTCACTGCTACAAACTTTTGTCCGCCGAACAATGCACTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTTTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACAATCAATGGCCATTCGTACTTCAATTTAGTGCTTATAACCAACGTCGGGGGAGGTGGAGATGTTCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATCTGAATGGACAAAGCTTGTCGTTCAAAGTGACGACCGGCGATGGCCGGACGGTGATATCCAACGACGTAGCGCCAGCTGGGTGGAACTTTGGTCAGACGTTTAGTGGGGCGCAGTGTCAAAATTCAAAAGGCTGTATTGAGAGACGCAAAGTCGAGATTTCTTCTGATTGGAGGGCCAGTTGTCATAGTCCAATTGGCAATCCACGATTCCACGTGGATATATTTCCGCAACCGTATCTTTACCAGAAGAAGACCCGTCCACGTAAGACAGACGTGGCCCCACATCATCATCAATCAGCCAATGAAAACATATCCAAAACTCCCGACGAATTTCCAGCCGTTAGATCGTTAAAATCTCGTAAATCAACCCTCAGATCTGAAGGGAAAACAAGAACCACAAACTTAACTTTGAAGAAATCATTCAAGGGAGAGATGGCCACTGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCAAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGTGTACTTAAATGGCAGTCTTCCGGGCGATAATGGATTTGACCCACTAGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTACGTGCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTGGGTGTCGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCTCCTCAGTGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCCCCCACTCTTGAAGCCAAAGAGAAGGAAATAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGGTTCATTGTGCAACACAACGTGACAGGGAAGGGGCCATTTGACAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTTCAGACATTTGGTGGCAACTAA | 1827 | 49.21 | MAFLGFLLVGLLLSLGCDSALGNNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDAKWCLPKSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLITNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVISNDVAPAGWNFGQTFSGAQCQNSKGCIERRKVEISSDWRASCHSPIGNPRFHVDIFPQPYLYQKKTRPRKTDVAPHHHQSANENISKTPDEFPAVRSLKSRKSTLRSEGKTRTTNLTLKKSFKGEMATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPVYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN | 608 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25126453 | 25132632 | + | Lsi06G014580.1 | Lsi06g01458 | 666188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01458 | 608 | SUPERFAMILY | PHL pollen allergen | 156 | 247 | IPR036749 | - | |
Lsi06g01458 | 608 | Pfam | Lytic transglycolase | 64 | 149 | IPR009009 | - | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 134 | 147 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 205 | 226 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 86 | 97 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 59 | 73 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 98 | 108 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 158 | 170 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 170 | 191 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 234 | 250 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | PRINTS | Expansin signature | 117 | 134 | IPR002963 | GO:0009664 | |
Lsi06g01458 | 608 | SUPERFAMILY | Chlorophyll a-b binding protein | 409 | 605 | - | - | |
Lsi06g01458 | 608 | Pfam | Expansin C-terminal domain | 160 | 237 | IPR007117 | - | |
Lsi06g01458 | 608 | Gene3D | Chlorophyll a/b binding protein domain | 419 | 598 | - | - | |
Lsi06g01458 | 608 | SUPERFAMILY | Barwin-like endoglucanases | 28 | 177 | IPR036908 | - | |
Lsi06g01458 | 608 | Pfam | Chlorophyll A-B binding protein | 419 | 578 | IPR022796 | - | |
Lsi06g01458 | 608 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 169 | 248 | IPR007117 | - | |
Lsi06g01458 | 608 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 47 | 159 | IPR007112 | - | |
Lsi06g01458 | 608 | Gene3D | - | 157 | 251 | IPR036749 | - | |
Lsi06g01458 | 608 | SMART | dpbb_1 | 64 | 149 | IPR007112 | - | |
Lsi06g01458 | 608 | Gene3D | - | 17 | 155 | IPR036908 | - | |
Lsi06g01458 | 608 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 357 | 608 | IPR001344 | GO:0009765|GO:0016020 | |
Lsi06g01458 | 608 | MobiDBLite | consensus disorder prediction | 299 | 319 | - | - | |
Lsi06g01458 | 608 | PRINTS | Expansin/Lol pI family signature | 142 | 158 | IPR007118 | GO:0005576 | |
Lsi06g01458 | 608 | PRINTS | Expansin/Lol pI family signature | 234 | 248 | IPR007118 | GO:0005576 | |
Lsi06g01458 | 608 | PRINTS | Expansin/Lol pI family signature | 28 | 43 | IPR007118 | GO:0005576 | |
Lsi06g01458 | 608 | PRINTS | Expansin/Lol pI family signature | 196 | 210 | IPR007118 | GO:0005576 | |
Lsi06g01458 | 608 | PRINTS | Expansin/Lol pI family signature | 46 | 64 | IPR007118 | GO:0005576 | |
Lsi06g01458 | 608 | PRINTS | Expansin/Lol pI family signature | 68 | 86 | IPR007118 | GO:0005576 | |
Lsi06g01458 | 608 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC | 357 | 608 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00351 | Lsi-Chr6:3836682 | Lsi06g01458 | Lsi-Chr6:25126453 | 9.63E-53 | dispersed | |
Lsi06g01458 | Lsi-Chr6:25126453 | Lsi11g00969 | Lsi-Chr11:15332481 | 8.57E-136 | dispersed | |
Lsi02g01721 | Lsi-Chr2:22918251 | Lsi06g01458 | Lsi-Chr6:25126453 | 6.22E-44 | transposed | |
Lsi04g00683 | Lsi-Chr4:6266236 | Lsi06g01458 | Lsi-Chr6:25126453 | 1.75E-68 | transposed | |
Lsi06g00634 | Lsi-Chr6:9269531 | Lsi06g01458 | Lsi-Chr6:25126453 | 2.47E-44 | transposed | |
Lsi08g00548 | Lsi-Chr8:13635761 | Lsi06g01458 | Lsi-Chr6:25126453 | 3.61E-28 | transposed | |
Lsi08g01472 | Lsi-Chr8:22846371 | Lsi06g01458 | Lsi-Chr6:25126453 | 9.15E-63 | transposed | |
Lsi02g01475 | Lsi-Chr2:20497709 | Lsi06g01458 | Lsi-Chr6:25126453 | 4.24E-121 | wgd | |
Lsi02g00081 | Lsi-Chr2:694390 | Lsi06g01458 | Lsi-Chr6:25126453 | 7.90E-62 | wgd | |
Lsi04g00406 | Lsi-Chr4:3973635 | Lsi06g01458 | Lsi-Chr6:25126453 | 1.58E-135 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01458 | K08910 | - | csv:101222701 | 499.59 |