Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01458 ATGGCGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTGATTCTGCTCTTGGTAACAACAATGGAGGAGGTTGGATTGATGCGCACGCCACATTCTACGGTGGGGGCGACGCTGCTGGTACAATGGGAGGGGCTTGTGGATATGGAAATCTGTATAGCCAGGGATATGGAACGAACACAGCAGCTCTGAGTACAGCTTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAAATGTGTAAATGATGCAAAATGGTGTCTTCCAAAGTCCATTGTCGTCACTGCTACAAACTTTTGTCCGCCGAACAATGCACTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTTTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACAATCAATGGCCATTCGTACTTCAATTTAGTGCTTATAACCAACGTCGGGGGAGGTGGAGATGTTCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATCTGAATGGACAAAGCTTGTCGTTCAAAGTGACGACCGGCGATGGCCGGACGGTGATATCCAACGACGTAGCGCCAGCTGGGTGGAACTTTGGTCAGACGTTTAGTGGGGCGCAGTGTCAAAATTCAAAAGGCTGTATTGAGAGACGCAAAGTCGAGATTTCTTCTGATTGGAGGGCCAGTTGTCATAGTCCAATTGGCAATCCACGATTCCACGTGGATATATTTCCGCAACCGTATCTTTACCAGAAGAAGACCCGTCCACGTAAGACAGACGTGGCCCCACATCATCATCAATCAGCCAATGAAAACATATCCAAAACTCCCGACGAATTTCCAGCCGTTAGATCGTTAAAATCTCGTAAATCAACCCTCAGATCTGAAGGGAAAACAAGAACCACAAACTTAACTTTGAAGAAATCATTCAAGGGAGAGATGGCCACTGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCAAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGTGTACTTAAATGGCAGTCTTCCGGGCGATAATGGATTTGACCCACTAGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTACGTGCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTGGGTGTCGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCTCCTCAGTGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCCCCCACTCTTGAAGCCAAAGAGAAGGAAATAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGGTTCATTGTGCAACACAACGTGACAGGGAAGGGGCCATTTGACAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTTCAGACATTTGGTGGCAACTAA 1827 49.21 MAFLGFLLVGLLLSLGCDSALGNNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDAKWCLPKSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLITNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVISNDVAPAGWNFGQTFSGAQCQNSKGCIERRKVEISSDWRASCHSPIGNPRFHVDIFPQPYLYQKKTRPRKTDVAPHHHQSANENISKTPDEFPAVRSLKSRKSTLRSEGKTRTTNLTLKKSFKGEMATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPVYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25126453 25132632 + Lsi06G014580.1 Lsi06g01458 666188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01458 608 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Lsi06g01458 608 Pfam Lytic transglycolase 64 149 IPR009009 -
Lsi06g01458 608 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Lsi06g01458 608 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Lsi06g01458 608 SUPERFAMILY Chlorophyll a-b binding protein 409 605 - -
Lsi06g01458 608 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Lsi06g01458 608 Gene3D Chlorophyll a/b binding protein domain 419 598 - -
Lsi06g01458 608 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Lsi06g01458 608 Pfam Chlorophyll A-B binding protein 419 578 IPR022796 -
Lsi06g01458 608 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Lsi06g01458 608 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Lsi06g01458 608 Gene3D - 157 251 IPR036749 -
Lsi06g01458 608 SMART dpbb_1 64 149 IPR007112 -
Lsi06g01458 608 Gene3D - 17 155 IPR036908 -
Lsi06g01458 608 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 357 608 IPR001344 GO:0009765|GO:0016020
Lsi06g01458 608 MobiDBLite consensus disorder prediction 299 319 - -
Lsi06g01458 608 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Lsi06g01458 608 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lsi06g01458 608 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Lsi06g01458 608 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Lsi06g01458 608 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Lsi06g01458 608 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Lsi06g01458 608 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 357 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00351 Lsi-Chr6:3836682 Lsi06g01458 Lsi-Chr6:25126453 9.63E-53 dispersed
Lsi06g01458 Lsi-Chr6:25126453 Lsi11g00969 Lsi-Chr11:15332481 8.57E-136 dispersed
Lsi02g01721 Lsi-Chr2:22918251 Lsi06g01458 Lsi-Chr6:25126453 6.22E-44 transposed
Lsi04g00683 Lsi-Chr4:6266236 Lsi06g01458 Lsi-Chr6:25126453 1.75E-68 transposed
Lsi06g00634 Lsi-Chr6:9269531 Lsi06g01458 Lsi-Chr6:25126453 2.47E-44 transposed
Lsi08g00548 Lsi-Chr8:13635761 Lsi06g01458 Lsi-Chr6:25126453 3.61E-28 transposed
Lsi08g01472 Lsi-Chr8:22846371 Lsi06g01458 Lsi-Chr6:25126453 9.15E-63 transposed
Lsi02g01475 Lsi-Chr2:20497709 Lsi06g01458 Lsi-Chr6:25126453 4.24E-121 wgd
Lsi02g00081 Lsi-Chr2:694390 Lsi06g01458 Lsi-Chr6:25126453 7.90E-62 wgd
Lsi04g00406 Lsi-Chr4:3973635 Lsi06g01458 Lsi-Chr6:25126453 1.58E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01458 K08910 - csv:101222701 499.59