Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01462 ATGGTTCAAGAGCAGCAAGCCACGTCATCGTGTAGCCGAGTTGTCGTTATTATTGGCTGCATGACTGATATCTTTTCTCCCGCGGAGGAACTAGACACTAAACAAAATTCGGGTTACCCATTACTCCACTTCGAGCTTCACTCCCTGCTCGACGAAATGGCCTCCGTTGCTCTCAAATCCTTCACCGGCCTCCGCCAATCCTCGACGGAGAAGCCCCGTTTCGTCACCCAAACGAAGGCCAACCCGAACCCCCAATTTCGGCGCCGATTTTATGTCGCCGCTGCTAAAACTAGCCCTAAAATCGCCGGCCGGAACCTCAGAGTCGCGGTTGTCGGCGGCGGTCCCGCTGGAGGGTCGGCAGCTGAAACTCTCGCCAGAGGCGGCGTTGAGACTTTCTTGTTCGAGAGGAAGCTCGACAACTGCAAGCCCTGCGGTGGTGCGATTCCGCTGTGTATGGTCGGCGAGTTCGATCTCCCGTTGGACCTGATTGACCGTCGTGTCACGAAGATGAAGATGATCTCTCCATCGAATGTCGCCGTCGACATTGGTCAAACCCTAAAACCTCACGAGTACATTGGGATGGTTCGGCGAGAGGTTCTGGACGCGTATCTTCGCAATCGAGCCGCTGAGAATGGGGCTAATGTGATTAATGGCTTGGTCATGAAATTGGAACTTCCGAAGGAACAAAATGCACCGTATGTCCTTCATTACACTGCATACGACGGGAAGAAAGGAGGCGTCGGAGAGAAGATGACATTGGAGGTCGACGCAGTGATCGGTGCCGACGGAGCTAATTCTCGTGTCGCCAAGGCCATTGACGCCGGCGATTACGATTACGCCATCGCATTTCAGGAGAGAATCAAAATCCCAGATGACAAAATGGTGTACTACGAGAATCTTGCAGAGATGTACGTAGGTGACGACGTGTCTCCGGATTTTTACGGGTGGGTTTTCCCGAAATGCGACCATGTCGCCGTCGGCACCGGCACGGTAACTCACAAGGCCGATATCAAGAAATTTCAAATAGCCACTCGAAACAGAGCAAAGGACAAGATCTTAGGAGGGAAGATCATCCGAGTTGAAGCACATCCAATTCCAGAACACCCTCGTCCACGACGGCTGGCCGGGAGAGTGGCACTTGTCGGCGATGCAGCTGGGTATGTGACGAAATGCTCTGGCGAGGGCATATATTTCGCAGCGAAGAGCGGGAGAATGTGCGCAGAGGCAATCGTGGAGGGATCGGAGAATGGGAAGAGAATGGTGGAGGAATCTGACCTGAGGAAGTATTTAGAGAAATGGGATAAAACTTACTGGCCGACATATAAGGTTCTGGATGTGTTGCAGAAAGTGTTTTACAGGTCGAATCCGGCAAGGGAAGCTTTTGTCGAGATGTGCGCCGACGAGTATGTGCAGAAGATGACATTCGACAGTTACTTGTATAAGAGAGTGGTGCCTGGGAATCCATTAGACGACTTGAAATTGGCTGTGAATACCATTGGGAGCTTGGTGAGAGCTAATGCTCTGAAGAGGGAGATGGAGAAACGCTCGAAAAAGGGACTAGATTCGCATTGCGGCGGTGTATTCGGTGCACAGAAAGAGAAAGGGAAACAATATAAAGCTTGGCTGTTAAAAAAGAATGTGATAACAAAAAAATGTTGGGCCGACAATCGGAGAAGAAAAGGAAGCACTGGCCGCCGGGATCTCACCATCAATGCATCGACGTTTGGAGACCGCTGCCGCCACCACCGTAGACTCGTCGGATTCAGTGGTCCCTGCCTCGTTGGAGAATACAGAGTCGCCGGGTGGCTAACCACTCTCACGAAGAAGATGCATCTCCTCACTGAATCAGATATGGCAGCAACATCAGCAGCTATTTTGTCAATTGGAGCAACAGTATCACTTAATACTAAACTCAACTCATTTGCCCAATCAAAGTCTGCTAGCTTAAGAATCAATTCACAAGAGACCCTTCAGAGCTTCTGTGGCCTCAAGGCAACTTCTTCTCTTCGTTGTGATTCAGAGTCATCTTTCCTAGGGAAACAGAGCAGTGCTGCTCTATGGCGTCATCTTGCTCCGTCAGCTCAAAGAGTGAACCAGAATGTATGCAAAAATCTTCAACCTCAAGCCTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGTGGAATAGGTCAGCCTTTGGCACTTCTCATCAAGATGTCGCCATTAGTTGCCACCCTGAACCTTTATGATATTGCAAATGTCAAGGGTGTTGCTGCTGATATTAGCCACTGCAACACTCCCGCAAAAGTTCAGGATTTCACTGGACCTTCTGAATTAGCCAATGCTTTAAAAGGTGTAGATGTTGTTGTCATACCTGCTGGGGTTCCGAGAAAGCCCGGTATGACTCGTGATGACCTCTTCAACATAAATGCTGGCATAGTGAAAAGTTTGGTCGAGGCAGTTGCTGATAATTGTCCTGATGCTTTCATCCATATCATTAGCAACCCTGTGAACTCAACTGTGCCAATAGCAGCAGAAGTTCTAAAGCAGAAAGGCGTGTATGATCCAAAGAAGCTTTTTGGGGTTACTACATTGGATGTTGTTCGGGCAAATACTTTCGTTGCTGAAAAGAAGAACCTTAAGCTGATCGATGTTGATGTCCCAGTTGTCGGGGGACATGCAGGAATAACAATTCTTCCTTTGCTATCAAAGACAAGACCTTCAGTGAGTTTCACAGATGAACAAATTCAAGAACTGACTGTTAGGATTCAAAATGCGGGAACCGAAGTTGTGGAAGCGAAGGCAGGGGCAGGATCTGCTACTCTTTCAATGGCATATGCTGCAGCAAGATTCGTCGAATCATCTCTTCGTGCTTTGGACGGAGACAGTGATGTATATGAGTGCACTTTTGTGCAGTCTGATTTAACTGAGCTTCCCTTCTTTGCATCGAGGGTTAAGCTCGGAAGGAAAGGGATTGAAGCCTTTGTAACGTCTGATCTCCAGGGTTTATCTGAGTACGAGCAGAAGGCTCTTGAAGCTCTAAGGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAGAAGCAAGCTGTGGCTGCATAA 3090 48.83 MVQEQQATSSCSRVVVIIGCMTDIFSPAEELDTKQNSGYPLLHFELHSLLDEMASVALKSFTGLRQSSTEKPRFVTQTKANPNPQFRRRFYVAAAKTSPKIAGRNLRVAVVGGGPAGGSAAETLARGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRNRAAENGANVINGLVMKLELPKEQNAPYVLHYTAYDGKKGGVGEKMTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLDDLKLAVNTIGSLVRANALKREMEKRSKKGLDSHCGGVFGAQKEKGKQYKAWLLKKNVITKKCWADNRRRKGSTGRRDLTINASTFGDRCRHHRRLVGFSGPCLVGEYRVAGWLTTLTKKMHLLTESDMAATSAAILSIGATVSLNTKLNSFAQSKSASLRINSQETLQSFCGLKATSSLRCDSESSFLGKQSSAALWRHLAPSAQRVNQNVCKNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVATLNLYDIANVKGVAADISHCNTPAKVQDFTGPSELANALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLSEYEQKALEALRPELKASIEKGIAFTQKQAVAA 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25154672 25165106 + Lsi06G014620.1 Lsi06g01462 666192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01462 1029 SUPERFAMILY LDH C-terminal domain-like 855 1022 IPR015955 GO:0003824|GO:0016616
Lsi06g01462 1029 Gene3D - 856 1027 IPR015955 GO:0003824|GO:0016616
Lsi06g01462 1029 CDD MDH_glyoxysomal_mitochondrial 711 1021 IPR010097 GO:0006099|GO:0030060
Lsi06g01462 1029 TIGRFAM BchP-ChlP: geranylgeranyl reductase 107 504 IPR010253 GO:0015979|GO:0015995|GO:0045550
Lsi06g01462 1029 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 107 129 - -
Lsi06g01462 1029 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 375 390 - -
Lsi06g01462 1029 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 254 269 - -
Lsi06g01462 1029 Pfam Glucose inhibited division protein A 108 142 IPR040131 -
Lsi06g01462 1029 Pfam lactate/malate dehydrogenase, NAD binding domain 712 854 IPR001236 GO:0016491
Lsi06g01462 1029 ProSitePatterns Malate dehydrogenase active site signature. 855 867 IPR001252 GO:0006108|GO:0016615
Lsi06g01462 1029 PANTHER MALATE AND LACTATE DEHYDROGENASE 642 1029 - -
Lsi06g01462 1029 Gene3D - 106 552 IPR036188 -
Lsi06g01462 1029 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 642 1029 - -
Lsi06g01462 1029 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 856 1021 IPR022383 GO:0016616
Lsi06g01462 1029 SUPERFAMILY FAD/NAD(P)-binding domain 106 488 IPR036188 -
Lsi06g01462 1029 TIGRFAM GG-red-SF: geranylgeranyl reductase family 108 410 IPR011777 GO:0016628
Lsi06g01462 1029 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 704 855 IPR036291 -
Lsi06g01462 1029 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 712 1022 IPR010097 GO:0006099|GO:0030060
Lsi06g01462 1029 Gene3D - 709 855 - -
Lsi06g01462 1029 TIGRFAM ChlP: geranylgeranyl reductase 106 504 IPR011774 GO:0045550
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01462 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - csv:101221755 907.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01462 Lsi-Chr6:25154672 Lsi10g00933 Lsi-Chr10:13775131 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01462 Lsi_Chr06 FPKM 4.773616 4.449702 2.498566 3.996006 10.249779 8.807373 10.417264 7.010006 7.190753 8.149446