Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01463 ATGACTGTGATCTTCCGCCGTCGTTCCATCCTCTCTCCGAAACACCATCATCATCCTATTCCTCTTCATCGTTTCGCATCCACCTCTCTGCTTTCTTCCAAATTTCGCCAACAAAACTCAACACCTCACTTGGAAAGAGAGCCCCTGATTTCTCTCATAAAATCATGCACCCACAAATGCCAATTCCTCCAAATCCATGCCCACATCATCCGTACTTCTTCCATTCAAGACCCCATTGTTTCCCTCTGCTTCTTGACTCGCACCGCCTCCACCCCTTTTCGCGATTTGGGCTATTCTCGACGATTCTTCTCTCTCCTGACTAACCCATTTGTTTCTCATTACAATGCGATGTTGAGAGCCTACTCTTTGAGCCGTTCACCACTTGAAGGATTGTACATGTACAGAGATATGGAGAGGCAAGGAGTTCGCGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGATTGCTTTCATTATTTAGTGGGGTTCAGATTCACGCGAGGATTTTTATTAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGACCTGTATTCTCATTGCGGCAAAATTGAGGATGCGTGCAAATTGTTCGACGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCTTGCCTAACTCGAAATAAACGAACCAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAAAGTATCTCTGCCAACCTGATAAAGTTACTTGTTTACTTCTCCTCCAAGCCTGTGCAGACTTGAATGCATTGGAATTCGGTGAAAGGATTCATAGTTACGTTCAACAACACGGTTATAATACTGAGAGTAATTTGTGCAATTCACTGATATCAATGTATTCGCGGTGTGGGCGTGTGGATAAGGCTTATGAAGTGTTTGATAAAATGCCAGAGAAAAATGTTGTTTCATGGAGTGCGGTGATTTCCGGGTTATCAATGAATGGGCACGGGAGAGAAGCTATTGAAGCGTTTTGGGAGATGCAAAAGAAGGGTGTTGAGCCTGATGATCATACTTTCACTGCAGTTCTTTCTGCTTGTAGCCACTGTGGCCTTGTTGATGAAGGAAGGGCTCTTTTTGATCGTATGAGACAGGAGTTTACGATAGTTCCCAACGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGATCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAACCCAGATGCGACATTGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCATAATTGAACATTTGATTGAACTCAAATCTCAAGAAGCTGGAGATTATGTGTTGTTGCTGAACATTTATTCTTCGGCTGGCAACTGGGACAAGGTAACCGAATTGAGGAAATTTATGAAGGAGAAGGGTATTTATACTTCACCTGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCTATGAAGGACAAGATTTACGAGCAGCTGGATGAGATCAACAAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAGATTGAAGGCAGAAGATAAGGGGTATGCGCTTTCTAACCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACTCCTCCAGGAAGAACCATCAGAGTGGCAAATAACCTTCGTACTTGCATGGATTGTCATAACTTTGCTAAGTATATCTCAAGTGTTTATAACAGAAAAGTGGTTGTTAGGGACCGAAGTCGGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG 1866 43.89 MTVIFRRRSILSPKHHHHPIPLHRFASTSLLSSKFRQQNSTPHLEREPLISLIKSCTHKCQFLQIHAHIIRTSSIQDPIVSLCFLTRTASTPFRDLGYSRRFFSLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIRLLSLFSGVQIHARIFINGHQSDSLLLTSMMDLYSHCGKIEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQSPKYLCQPDKVTCLLLLQACADLNALEFGERIHSYVQQHGYNTESNLCNSLISMYSRCGRVDKAYEVFDKMPEKNVVSWSAVISGLSMNGHGREAIEAFWEMQKKGVEPDDHTFTAVLSACSHCGLVDEGRALFDRMRQEFTIVPNVHHYGCMVDLLGRAGMLDQAYQLVMSMEVNPDATLWRTLLGACRIHGHANLGERIIEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKFMKEKGIYTSPGCTTIELNGVVHEFAVDDISHPMKDKIYEQLDEINKQLKIAGYEAEISSELHRLKAEDKGYALSNHSEKLAIAFGVLATPPGRTIRVANNLRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFREGRCSCNDYW 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25165708 25167573 - Lsi06G014630.1 Lsi06g01463 666193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01463 621 Pfam PPR repeat family 210 260 IPR002885 -
Lsi06g01463 621 Pfam PPR repeat family 313 361 IPR002885 -
Lsi06g01463 621 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 41 613 - -
Lsi06g01463 621 TIGRFAM PPR: pentatricopeptide repeat domain 286 315 IPR002885 -
Lsi06g01463 621 TIGRFAM PPR: pentatricopeptide repeat domain 316 349 IPR002885 -
Lsi06g01463 621 TIGRFAM PPR: pentatricopeptide repeat domain 351 385 IPR002885 -
Lsi06g01463 621 TIGRFAM PPR: pentatricopeptide repeat domain 114 145 IPR002885 -
Lsi06g01463 621 TIGRFAM PPR: pentatricopeptide repeat domain 185 213 IPR002885 -
Lsi06g01463 621 TIGRFAM PPR: pentatricopeptide repeat domain 213 240 IPR002885 -
Lsi06g01463 621 Pfam E motif 433 493 IPR046848 -
Lsi06g01463 621 Pfam PPR repeat 388 413 IPR002885 -
Lsi06g01463 621 Pfam PPR repeat 113 142 IPR002885 -
Lsi06g01463 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Lsi06g01463 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 379 IPR002885 -
Lsi06g01463 621 PANTHER OS08G0434000 PROTEIN 41 613 - -
Lsi06g01463 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Lsi06g01463 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Lsi06g01463 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 313 IPR002885 -
Lsi06g01463 621 Pfam DYW family of nucleic acid deaminases 529 621 IPR032867 GO:0008270
Lsi06g01463 621 Pfam PPR repeat 288 310 IPR002885 -
Lsi06g01463 621 Gene3D Tetratricopeptide repeat domain 380 558 IPR011990 GO:0005515
Lsi06g01463 621 Gene3D Tetratricopeptide repeat domain 265 379 IPR011990 GO:0005515
Lsi06g01463 621 Gene3D Tetratricopeptide repeat domain 160 264 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01463 - - - csv:105436340 1110.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00956 Lsi-Chr5:16710070 Lsi06g01463 Lsi-Chr6:25165708 0 dispersed
Lsi06g01463 Lsi-Chr6:25165708 Lsi06g00945 Lsi-Chr6:19384143 4.11E-64 dispersed
Lsi06g01463 Lsi-Chr6:25165708 Lsi08g01196 Lsi-Chr8:20533459 1.03E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006872 1 7 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 2 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01463 Lsi_Chr06 FPKM 12.046353 11.594201 12.932329 13.11418 17.822109 18.30212 17.913296 11.264616 12.303606 12.758161