Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01472 ATGGAAGGAGGTGATGAACTTCACCACCATCACCACCACCATCAGAACCACCACCAACACCACCACCGTCCCACCTTCCCATTTCAATTACTCGAAAAGAAAGAAGATGATGCCGCCTCTTGCTCCACCTCTCCCTACCCTTCTCTCGCCATCTCCGCCGACACCACCACCACTACAACCACCGCCGTTGTCACTTCCGCTGCAGAACCCTCCAAGAAGCCACCTCCAAAGAGAACCTCCACCAAAGACCGTCACACAAAAGTCGACGGTCGTGGTCGTCGTATCCGAATGCCGGCCTTATGTGCAGCTAGGGTATTCCAACTCACTCGAGAATTAGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTTCAACAGGCGGAGCCTGCCGTGATTGCCGCCACTGGAACCGGTACCATCCCTGCTAATTTCACATCGCTCAACATCTCATTACGTAGCTCCGGTTCAAGTATGTCCGTCCCTTCACAGCTCCGATCCTCCTCTTATTACAACCCGAATTTCTCCCTTCATCAACAACGCAGAACCCTCTTCCCGGGATTCGGCCTCTCATCGGAAACGTCCTCCACCGCCCTCCTCAATTTCCAGTCCACCAACATCGGAAACTCTCTGCTCCAAGCCAAACCCGAACTCAGAGACACTACCTCTTCATTAGACCTCTCCGAGGCGGCGGAGGAAATCAGCATAGGGCGGAAGAGAAGACCGTCGACGGAGCAGGAGTTGTCGTCGTCGTCCTCCCAGAATCAAATGGGAGGGTATCTGTTGCAGTCGAGTACAGGCACGATTCCGGCCAGCCACGGAGGAGCTCAGGTTCCGGCGAATTTTTGGATGCTTACGAATACGAATAACCAAGTGATGGGGGGTGATCCAATATGGACGTTTCCGTCGGTTAATAACAGCGGTTTGTACAGAGGAACGATGTCGAGTGGGTTACATTTCATGAACTTCCCGGCACCGGTGGCGTTGGTTCCGGGTCAGCAATTCGGGTCCGGCACCGGCGGAGGGAATAATAGTTCCAGTGAGGGACACTTGAATATACTTGCAGGGCTAAATCCGTATCGATCGGTGTCAAACTCCGGCGTAATGGAACCACAAGGAAGTGGGTCACACTCACATCACGGCGGCGGTGGAAGTAACGGCGGTGGGGATGATCGGCATGATACAGCCAGCCATCACTCGTAG 1203 54.36 MEGGDELHHHHHHHQNHHQHHHRPTFPFQLLEKKEDDAASCSTSPYPSLAISADTTTTTTTAVVTSAAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSSYYNPNFSLHQQRRTLFPGFGLSSETSSTALLNFQSTNIGNSLLQAKPELRDTTSSLDLSEAAEEISIGRKRRPSTEQELSSSSSQNQMGGYLLQSSTGTIPASHGGAQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGTGGGNNSSSEGHLNILAGLNPYRSVSNSGVMEPQGSGSHSHHGGGGSNGGGDDRHDTASHHS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25231360 25232562 + Lsi06G014720.1 Lsi06g01472 666202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01472 400 MobiDBLite consensus disorder prediction 1 24 - -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 231 268 - -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 362 381 - -
Lsi06g01472 400 ProSiteProfiles TCP domain profile. 81 135 IPR017887 -
Lsi06g01472 400 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 399 IPR005333 GO:0003700
Lsi06g01472 400 Pfam TCP family transcription factor 79 249 IPR017887 -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 61 92 - -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 362 400 - -
Lsi06g01472 400 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 15 399 - -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 10 24 - -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 75 92 - -
Lsi06g01472 400 MobiDBLite consensus disorder prediction 246 268 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00060 Lsi06g01472 CCT
Lsi02g00060 Lsi06g01472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00710 Lsi-Chr4:6498851 Lsi06g01472 Lsi-Chr6:25231360 1.84E-40 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi06g01472 Lsi-Chr6:25231360 1.90E-37 dispersed
Lsi06g01472 Lsi-Chr6:25231360 Lsi09g01921 Lsi-Chr9:28061652 1.22E-38 dispersed
Lsi02g00060 Lsi-Chr2:554602 Lsi06g01472 Lsi-Chr6:25231360 5.50E-15 wgd
Lsi04g00434 Lsi-Chr4:4137810 Lsi06g01472 Lsi-Chr6:25231360 1.83E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25542 PF03634 TCP 1.20E-39 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01472 - - csv:101221049 624.78