Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01473 ATGGGAAGGACTGCAATTTTCTTGGCTCACTCCACCACTGTCGCCTTGATCTGGATCACCTCTGCCGTCCTCTTCTTCTTCCTCTTCGAAATGGCCCTCCACAACTCTAGTTCTGCTTCTTCCTCAGATTCTTCCTTAACGAATTCTGAGTTAAGATCAAAATTATACGATAAGATGGAGAGGGATTTGGATGAGAAAGGGGCACTTTTCCTCAAGGACGGTGAAACATCTCAGTCTTTATCACTTTCTGATATCTTCACTATTAAGGATGGGTCTGTGACCCCTGCAGCAAATCCTCCTGTTCGTGCTAATGTTTTGTATCTAAGCACAGAGTACTCAGTTCCCATATCGTATATTGAAGCTGAAGCAACTGCTGTGAAGTCTGCAACACAGCATATGTGCCGATTGAAAATAGTTCTAGACAGGGTTATTCTAACTTCAACAGGTGTTCTTCTAGGATGTTGGCAGGTAATATCAGGGACAGATCCTGTGACCATCCGTGCTAAACTAAGGGCAGCACTTCCACATGCACCTGAGAAGCAACTGTACGATGCTGCTATTCTTCACACATCATTTGCTCGGCTTTTGGGTCACCCAAAAGTTTCAGAAACGCTCCATAGAAGTTCTGATGAACTCCAACTCTTTCACGAGCTGGTTGCTCGCTTGAATAAACAAATCCGTGGATTTGAGGCAGCAGTGTCGGAGCTGTGGTATGTGGAGGAATATGATGTTTTAGCTCTGGCTTTGAATGGAAGAATGAAGAAGATCATGGTTTCTGAGGTTCCTTCAAAACCGGTTGTTGAAACTGATGCTCCAGTCATGGCGTCGGTGTCTAGGAATTGTCCTGGTAAAAAGAATCAGGTGAAAGTTCCTAAGAAAATTCACAAGGCTGAGAGGGAGAAGTTGAAGCGAGAGCATTTAAACGATCTTTTCCTTGACCTCGCAAATACACTTGAGCTGACAGAACCGAATAATGGAAAGGCATCCATATTGTGTGAAGCAAGCCGGCTGCTGAAAGACTTGTTTGGTCAGATTGAGTGCCTCAGAAAGGAGCATGCGTCGTTGTTGTCAGAATCCCGATACGTTGACATTGAGAAGAATGAGCTGCGAGAAGAGACTACTGCATTAGCATCTCAGATTGAGAAACTGCAAAGTGAGTTACAATCAAGGGCTGTACATTCTAAACCCGACTTAAATATTCCCCCACCTTCAGAGTTTCTGCAACAAGGGACGACAGTACCACATTTCGCAGGGGAATGCCTGGGAATGCCTGTTATGGAACCTACATTGCAGCAAACACATGCTGTTTTTATCGTCCCTGTGCAGCCAGATCTCCCATCTTATCCAGCAATGGATGCAGCTCATGCCCCAACAATGCCGACCTCACATGTAAGCAAACCACATGCCAGATATCCAACACCAGCAGATTCATGGCCTGCTGGACTTCTCAAATTGTCACAAACAACAGAAGCAAGTAAAGAAATTTTAGCCATTGGTTGCAAGAGCATTGCAGATATGGTCGAAAGAGGATTTGACAGAAGTGAGAGCTGA 1551 44.81 MGRTAIFLAHSTTVALIWITSAVLFFFLFEMALHNSSSASSSDSSLTNSELRSKLYDKMERDLDEKGALFLKDGETSQSLSLSDIFTIKDGSVTPAANPPVRANVLYLSTEYSVPISYIEAEATAVKSATQHMCRLKIVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRAALPHAPEKQLYDAAILHTSFARLLGHPKVSETLHRSSDELQLFHELVARLNKQIRGFEAAVSELWYVEEYDVLALALNGRMKKIMVSEVPSKPVVETDAPVMASVSRNCPGKKNQVKVPKKIHKAEREKLKREHLNDLFLDLANTLELTEPNNGKASILCEASRLLKDLFGQIECLRKEHASLLSESRYVDIEKNELREETTALASQIEKLQSELQSRAVHSKPDLNIPPPSEFLQQGTTVPHFAGECLGMPVMEPTLQQTHAVFIVPVQPDLPSYPAMDAAHAPTMPTSHVSKPHARYPTPADSWPAGLLKLSQTTEASKEILAIGCKSIADMVERGFDRSES 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25240732 25249743 + Lsi06G014730.1 Lsi06g01473 666203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01473 516 CDD bHLH_AtILR3_like 296 370 - -
Lsi06g01473 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 355 IPR036638 GO:0046983
Lsi06g01473 516 Coils Coil 338 358 - -
Lsi06g01473 516 PANTHER TRANSMEMBRANE PROTEIN 9 117 - -
Lsi06g01473 516 PANTHER TRANSMEMBRANE PROTEIN 119 255 - -
Lsi06g01473 516 Coils Coil 366 386 - -
Lsi06g01473 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 341 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01473 - - - csv:101220270 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01473 Lsi-Chr6:25240732 Lsi10g00463 Lsi-Chr10:6712227 1.60E-18 dispersed
Lsi06g01473 Lsi-Chr6:25240732 Lsi01g00601 Lsi-Chr1:4802303 2.92E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g535 . . . . . . . Bma12g01000 . . Cma10g00185 . Car10g00175 Car11g00145 . . Cpe04g01506 Bhi02g00333 Tan09g2136 . . Hepe09g0127 . . Cla06g01597 Cam06g1771 Cec06g1823 Cco06g1830 Clacu06g1734 Cmu06g1678 Cre06g2494 . . Cone13ag0077 Cone19ag0077 . . . . . . . . Bpe07g00787 . . . . Cmo10g00202 Cmo11g00157 . . . . . Cpe18g00800 . . . . . . . . . . . . . . Lsi06g01473 Csa01g00226 Chy02g02506 Cme02g01892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010717 0 2 0 2 1 0 2 0 0 1 0 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 3 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01473 Lsi_Chr06 FPKM 1.815553 1.752661 0.420969 0.55747 0.74448 0.602185 0.741477 4.563913 4.576405 3.767242