Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01475 ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGTTCAAGAATCACTGATGACCAAATTAATGATCTTGTTTCCAAGTTGCAACAACTTCTTCCTGAGATTCGCCCCACGCAATCTGATAAGGTTTCAGCAGCAAAAGTGTTGCAGGAGACATGCAACTACATAAGAAACTTGCATAGAGAAGTGGATGATTTAAGTGAGAGACTTTCAGAGTTGTTGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAG 276 40.58 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRPTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25264807 25265495 + Lsi06G014750.1 Lsi06g01475 666205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01475 91 Gene3D - 6 87 IPR036638 GO:0046983
Lsi06g01475 91 PANTHER TRANSCRIPTION FACTOR PRE3 1 90 - -
Lsi06g01475 91 CDD bHLH_AtPRE_like 16 76 - -
Lsi06g01475 91 Coils Coil 56 83 - -
Lsi06g01475 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 77 IPR036638 GO:0046983
Lsi06g01475 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Lsi06g01475 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lsi06g01475 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01475 - - - csv:101219790 152.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00303 Lsi06g01475 CCT
Lsi02g00303 Lsi06g01475 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00739 Lsi-Chr8:15738706 Lsi06g01475 Lsi-Chr6:25264807 4.47E-36 transposed
Lsi02g00303 Lsi-Chr2:2612683 Lsi06g01475 Lsi-Chr6:25264807 1.95E-41 wgd
Lsi02g01492 Lsi-Chr2:20732757 Lsi06g01475 Lsi-Chr6:25264807 1.22E-36 wgd
Lsi02g00056 Lsi-Chr2:536620 Lsi06g01475 Lsi-Chr6:25264807 1.11E-14 wgd
Lsi04g00440 Lsi-Chr4:4217941 Lsi06g01475 Lsi-Chr6:25264807 8.69E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g527 . . Bda06g00550 Bda15g00576 Bpe12g00553 . . Bma12g01001 . . Cma10g00183 Cma11g00152 Car10g00173 Car11g00142 Sed08g0205 . Cpe04g01507 Bhi02g00335 Tan09g2138 Cmetu02g1801 . Hepe09g0129 . . Cla06g01599 Cam06g1773 Cec06g1825 Cco06g1832 Clacu06g1736 Cmu06g1680 Cre06g2496 . . Cone13ag0080 Cone19ag0083 Lsi02g00303 . Chy12g01333 Cme12g01762 Blo13g00015 . . . Bpe07g00789 . . . Sed01g1823 . . . Cma18g00121 . Car18g00111 Cpe09g01071 Cpe18g00801 Bhi08g01396 Tan05g2096 Cmetu12g1502 Lac10g0362 Hepe07g2292 . . Cla01g01433 Cam01g1501 Cec01g1541 Cco01g1586 Clacu01g1525 Cmu01g1416 Cre01g1335 Lsi06g01475 Csa01g00224 Chy02g02508 Cme02g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000232 9 5 5 6 7 5 7 5 5 5 5 5 7 5 5 4 5 6 8 5 4 4 5 2 4 5 5 8 5 3 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25543 PF00010 HLH 3.20E-07 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01475 Lsi_Chr06 FPKM 4.550224 4.342982 5.380016 6.193429 10.087869 9.110079 10.334167 4.970798 4.889471 4.335264