Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01476 ATGGTGTTGGTGTTGGCTTTGGGGGATTTACATATACCACATAGAGCTCCTGACCTTCCCGAGAAGTTCAAGTCTATGCTTGTTCCTGGCAAGATCCAGCACATAATCTGCACTGGAAACCTTTGTATCAAAGAAGTTCATGACTACTTGAAAACTATTTGTCCGGATTTGCACATCACACGAGGTGAATATGATGAAGAGACTCGCTATCCTGAGACAAAAACCCTGACTATTGGACAATTTAAATTGGGACTGTGCCATGGGCATCAGTGTATTATAGTTTTTACCATTATGAGGGATCATTACAAATGGTTTCTCAGATACAGTGCTCTATTATTAATGGGATCGACTAAAGTTTCCTGTTTTCTTCTTTCCGTTATTCCTTGGGGAGACCTAGACTCACTCGCCATGATGCAGAGGCAGCTAGATGTTGACATCCTTGTCACTGGTCACACCCATCAATTTACAGCTTACAAACATGAGGGAGGTGTGGTGATTAACCCTGGATCTGCAACAGGTGCGTATAGCAGCATCACGTATGACGTCAACCCAAGCTTTGTCCTTATGGACATCGATGGCCTTCGTGTTGTGGTCTACGTTTACGAACTCATTGATGGAGAGGTTAAGGTAGACAAGATTGATTTCAAGAAGACAACCACGACAGCTCATTGA 672 43.15 MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITRGEYDEETRYPETKTLTIGQFKLGLCHGHQCIIVFTIMRDHYKWFLRYSALLLMGSTKVSCFLLSVIPWGDLDSLAMMQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTTTTAH 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25269765 25273128 + Lsi06G014760.1 Lsi06g01476 666206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01476 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29 1 92 - -
Lsi06g01476 223 Pfam Calcineurin-like phosphoesterase superfamily domain 4 192 IPR024654 -
Lsi06g01476 223 PANTHER VACUOLAR SORTING PROTEIN VPS29 1 92 IPR000979 -
Lsi06g01476 223 Gene3D - 99 217 IPR029052 -
Lsi06g01476 223 Gene3D - 1 98 IPR029052 -
Lsi06g01476 223 PANTHER VACUOLAR SORTING PROTEIN VPS29 111 221 IPR000979 -
Lsi06g01476 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29 111 221 - -
Lsi06g01476 223 SUPERFAMILY Metallo-dependent phosphatases 1 216 IPR029052 -
Lsi06g01476 223 CDD MPP_Vps29 3 215 IPR028661 GO:0030904|GO:0042147
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01476 K18467 VPS29; vacuolar protein sorting-associated protein 29 - csv:101219548 373.244
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g525 . . . . . . . . . . . Cma11g00153 Car10g00172 Car11g00141 Sed08g0204 . Cpe04g01508 Bhi02g00336 Tan09g2139 Cmetu02g1862 . Hepe09g0130 . . Cla06g01600 Cam06g1774 Cec06g1826 Cco06g1833 Clacu06g1737 Cmu06g1681 Cre06g2497 . . . . . . . . Blo13g00016 . . . . . . . . . Cmo11g00155 . . . . . Cpe18g00802 . . . . . . . . . . . . . . Lsi06g01476 Csa01g00223 Chy02g02509 Cme02g01895
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006547 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01476 Lsi_Chr06 FPKM 0.106796 1.457005 0.534296 0.843709 0.0 0.0 0.0 0.059117 0.0 0.539842