Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01480 ATGGCGGATCATTCTGTTGGTCCAGCCAGTTTCTGGACTCAAGCTAATGCTCTACTCAGAAAAAACTTGACTTATCAGAAACGCAACATGAAGACAAATATTCGGCTCATTTTGTTCCCATTCCTCTTGTGTTTGTTGCTTGTACTCATTCAATCATTGATTGACAATGAATTGGACAAGCCCAAATACAGATGTGGTTGTTCATGTATTGATACTAATGGAGATGGCCGCTGTGAGGAAGTTTGTGGAGTTCAATTTTCAACTTTGGAACAAGCTTCAAGTTGCCCAATTGAAAACCCACCTGAATGGCCTCCTTTGTTGCAAATGCCAGCTCCCGAGTTTCGTGCTGTTAGAACCAATTTTAATCCATTTCTAGACTTACCAGACGAGTCGTGCAGGCGAACTGGGACCTGTCCTGCAACTGTACTATTCACTGGAACTAATCAATCTCTAGGAGAAATTCTGGCTGGAAGCATGTTCACGAATTCATTCAATATGAATTCCAACAATGTTTCGGATAGTATAGCTTTTAATGTGGTGGGCTCAAGTTCAATGACTGAAAATAACAATTTTCTGGAGCCTGCTTTTGCTTCAAACCTTCCTTTGTATAATGTGCAACTTCAGTGCTCAGGAAACTCTTCTCTGACTGTTCCTTTTCCTGTATTAGCAACTCAAAAGCCTCAAGGTAAGAGCTTTTTCTCATTAGATATATTTTTCAATTTTCTCTCATGGTTTGGTCAGGTTAGGTTAGATGTGCTCAAGGCTTACATTTGTGGCGCAACAGTGCTTCCGAGGTCAATGATGAGCTGTTTTGATTTCTTAAACTCAAATGCTAATAACTTTAATGTGAGCGTTTGGTACAACTCAAGTTTTAAAAACGACTCTGGAAATCTTCCTCCGGCATTATTGCGTATTCCACGCTCGGTGAATCTGGCAACCAATGCCTACCTCAAACTTTTGCAAGGGTCAGGTACTGAAATTCTTTTTGAGTTCGTCAAAGAAATGCCAAAGGCGGCATCAAAGCTCAGACTCGATCTATCTTCTTTGCTTGGCACACTTTTCTTTACTTGGGTCGTTCTGCAGCTTTTCCCTGTTGTGTTGACAGCACTGGTTTATGAGAAGCAACAGAAGCTGAGAATCATGATGAAAATGCATGGCCTTGGTGATGGACCTTATTGGTTGATCTCTTATGCATATTTCCTTACAATATCTGCCATCTACATGCTATGTTTTGTGATATTTGGCTCAGTTATAGGGTTGAAATTTTTCACATTGAACGACTACAGCATCCAATTCGTGTTTTTTTTCCTCTATATAAACTTGCAAATTTCTTTGGCTTTTCTAACTGCAGCATGGTTTTCAAATGTCAAGACTGCTGCAGTCCTTGCTTACATACTCGTATTCGGAACGGGGCTCTTAGGCGGCTTCCTTTTTCAGTTTTTCCTTGAAGACCCATCATTTCCAAATGCCTGGATTATAGTATTGGAGTTATTCCCTGGCTTTGCTCTATATCGTGGATTATATGAGTTTGCACAGTATTCCTTCAACGGAAACTTCATGGGGACTGATGGAATGCGTTGGGGGAACTTGAGTGATGAATTTAACGGGATGCGAGATGTCATGATCATCATGGTTGTGGAGTGGTTGTTGGTATTTTTGGTTGCATATTATGTAGATCAAATTTCATCCTCTGGTGGTGGGAAAAGTCCTCTGTTTTTCTTGAGAAGGTTTCGGAAAAAGGCTGCCACATCTTTTCGGTTACCAAGTTTGCGGAAGCAAGGATCTAAAGTCTTTGTTCAGATGGAACAGCCTGATGTCATTCAAGAGAGGGAGAAGGTCGAACAGTTATTACTTGAGCCAGATGCGAGTCACGCCATCGTGTGTGACAACCTCAAAAAGGTCTATCCAGGAAGAGATGGAAATCCTGAGAAGTTTGCTGTAAAAGGGTTATCTCTTGCTGTTCCTCGAGGGGAGTGCTTTGGCATGCTCGGTCCGAATGGTGCAGGAAAGACCTCATTTATCAGTATGATGATTGGCCTCACAAAGCCAAGTGCTGGCACAGCTTACGTCCAAGGTATGGATATCCGGCACGATATGGATAGGATATATACCAGCATGGGAGTATGTCCACAGCACGACCTGCTATGGGAACAACTCACAGGAAGAGAACACCTACTCTTCTATGGAAGACTGAAGAATCTACGGGGCTCCGCGCTAACTGAAGCAGTGGAAGAATCTTTAAAGGGTGTCAATCTATATCATGGAGGAATTGCAGACAAACAAGCTGGAAAGTACAGTGGGGGTATGAAGAGGAGGCTTAGTGTTGCCATTTCACTAATTGGAGACCCCAAAGTTGTTTACATGGACGAGCCGAGCACTGGACTTGATCCCGCTTCAAGAAACAGTTTGTGGAACGTTGTGAAGCGCGCTAAGCGAGATCGAGCTATAATTCTTACCAGTACCTCTCTTCTCTCTCTCAATGAAACTCAATTTATCATCACTAGATATTGTTTAAAGAATGAGCACATTCCATGGAGGAGGCTGAAGTCCTCTGCGACCGATTAG 2565 42.42 MADHSVGPASFWTQANALLRKNLTYQKRNMKTNIRLILFPFLLCLLLVLIQSLIDNELDKPKYRCGCSCIDTNGDGRCEEVCGVQFSTLEQASSCPIENPPEWPPLLQMPAPEFRAVRTNFNPFLDLPDESCRRTGTCPATVLFTGTNQSLGEILAGSMFTNSFNMNSNNVSDSIAFNVVGSSSMTENNNFLEPAFASNLPLYNVQLQCSGNSSLTVPFPVLATQKPQGKSFFSLDIFFNFLSWFGQVRLDVLKAYICGATVLPRSMMSCFDFLNSNANNFNVSVWYNSSFKNDSGNLPPALLRIPRSVNLATNAYLKLLQGSGTEILFEFVKEMPKAASKLRLDLSSLLGTLFFTWVVLQLFPVVLTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFLTISAIYMLCFVIFGSVIGLKFFTLNDYSIQFVFFFLYINLQISLAFLTAAWFSNVKTAAVLAYILVFGTGLLGGFLFQFFLEDPSFPNAWIIVLELFPGFALYRGLYEFAQYSFNGNFMGTDGMRWGNLSDEFNGMRDVMIIMVVEWLLVFLVAYYVDQISSSGGGKSPLFFLRRFRKKAATSFRLPSLRKQGSKVFVQMEQPDVIQEREKVEQLLLEPDASHAIVCDNLKKVYPGRDGNPEKFAVKGLSLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPSAGTAYVQGMDIRHDMDRIYTSMGVCPQHDLLWEQLTGREHLLFYGRLKNLRGSALTEAVEESLKGVNLYHGGIADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNSLWNVVKRAKRDRAIILTSTSLLSLNETQFIITRYCLKNEHIPWRRLKSSATD 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25281242 25286169 - Lsi06G014800.1 Lsi06g01480 666210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01480 854 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 823 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lsi06g01480 854 Pfam ABC transporter 648 792 IPR003439 GO:0005524
Lsi06g01480 854 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 7 823 - -
Lsi06g01480 854 SMART AAA_5 656 849 IPR003593 -
Lsi06g01480 854 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 853 IPR003439 GO:0005524
Lsi06g01480 854 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524
Lsi06g01480 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 823 IPR027417 -
Lsi06g01480 854 Gene3D - 618 839 IPR027417 -
Lsi06g01480 854 Pfam ABC-2 family transporter protein 37 556 - -
Lsi06g01480 854 CDD ABC_subfamily_A 630 835 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01480 - - - cpep:111794060 1405.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00306 Lsi-Chr2:2629077 Lsi06g01480 Lsi-Chr6:25281242 0 dispersed
Lsi03g00409 Lsi-Chr3:4666444 Lsi06g01480 Lsi-Chr6:25281242 1.27E-15 dispersed
Lsi06g01480 Lsi-Chr6:25281242 Lsi10g00745 Lsi-Chr10:10295824 1.06E-18 dispersed
Lsi06g01480 Lsi-Chr6:25281242 Lsi06g01481 Lsi-Chr6:25291196 1.04E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01480 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0