Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01481 ATGGAATTAAGAAGCGGATTTCCGCTTCTTCTTCAACAATACCAAGCGCTGTTCAAGAAGAATCTCTTGCTTTCATGGCGGAGCAAGAGGGCTACATTTCTCCAGCTATTTTCCTCTCTCTTTTTCATCTTCCTCATTTTCTGTATTCAGAAAGCCATCGAGGCTCGCTTTAGCAACTCCACTGCTTTGAACGATGTTCGTAATCCTGAACTTCAGGCTAACCCTCCGATTCCACCTTGTGAGGACAAGTACTACATAAAGCTTCCTTGTTATGACTTTGTGTATAGTGGCAGTTCGAGCCCCAAGGTTCGCAGCATTGTCGGCGCTATCATGGCTAATAACCCTGGACGATCGATTCCATCGAGTAAGGTTCTACCTTTTGGTACACCTGCTGAAGTTGATAAATGGCTTCTTAACAACCCTATGACTTGCCCTGGTGCCTTGCATTTCACTGAAAGAAATGGGACTGTGATTAGTTATGGTATACAAACTAATTCTACTGCTGTGGCAAGGAGAGGACAATACGAAGACCCCACTTTTAAATTTCAAATTCCTCTCCAGATAGCTGCAGAGCGTGAAATTGCGCGATCTTTGATTGGGGTTCCCAACTTTAGCTGGGTTGTCAACTTCATGGAATTTGCACACCCACCAGTGGACAATTTCTCTGCAGTGAATACCGTTGGTCCAACATTCTTCCTAGCTATTGCTATGTTTGGCTTTGTACTTCAAATTAGTTCCTTGATCACAGAAAAAGAGCTCAAACTTCGCCAGTCAATGACGATGATGGGTCTGTATGATACTGCATATTGGCTATCATGGCTCACATGGGAAGGAATTACCACACTCATTGCATCTCTTTTCACTGTTCTATTTGGAATGATGTTTCAGTTTGACTTTTTCTCTAAAAACAACTTTGCGGTCGTGTTTCTCGTCTTCTTTCTCTTCCAACTGAATATGGTTGGATTTGCTTTTATGTTATCAGCCTTTATAAGCAAGTCGTCTTCATCAACTACCGTGGGCTTCTCCATATTTATTGTTGGATTTCTCACTCAGCTTGTCACTGCATTTGGATTTCCTTATTCAGCTGACTTCTCAAAATTTTTTCAAGTCATTTGGTCCTTGTTCCCGCCAAATCTTCTTGCTAAAGCTCTTTCTCTGCTCTCCGATGCCACTTCCACCCCAGGAGATCCGGGAATCAGCTGGAGTAGACGCACGGAGTGTGCTCCAAACGATACTGAGTGTGTCATAACTATAAATGATATTTATTTATGGCTTGTGGGGACATTCTTCTTATGGTTTTTCTTGGCCATCTACCTCGACAACGTCATCCCAAATGCTGCTGGTGTGAGAAAGTCAGCCTTTTACTTTTTGAGGCCAGGATATTGGACAGGGAAAGGAGGAAGTAAAGTTGAAGAGGGTGGCATCTGCAGTTGCTTTGGTTCACTTCCAGTATTGGAGCCTACGACTCCAGATGATGAAGATGTTCTTGAAGAGGAAAACACGGTAAAACGACAACTTTCAGATGGAATAATGGATTCAAATGTTGCGGTTCAAATAAGTGGCCTAGCAAAGACATATCCTGGAGCTTGGAAGGCCAACTTACGTTGCTGCTGTAAATGCAAGAAAACCCCTCCTTACCACGCTGTCAGGGGCTTGTGGGTGAACTTTGCTAAGGATCAACTATTTTGTCTTCTTGGACCAAATGGTGCTGGGAAAACCACAGCAATCAACTGTTTGACAGGGATTACACCTGTGACTGGTGGAGATGCATTAATATATGGATATTCTGTTCGTGACTCTGTTGGCATGGCAAACATTCGGAGAATTATTGGTGTCTGTCCCCAGTTTGATATACTGTGGGATGTCTTATCTGGGCAAGAACACCTCCATCTTTTTGCTACAATAAAAGGCCTCCCACCATCTTCAATAAAATCGATTGCTGAGAAGTCATTGGAAGAAGTAAGACTCACTCAGTCTGCCAAAACGAGAGCAGGGAGTTACAGCGGGGGAATGAAACGTCGATTAAGTGTTGCCATAGCTCTTATTGGTGATCCAAAATTGGTCATCTTAGATGAACCGACAACTGGAATGGATCCAATAACAAGGAGGCACGTATGGGATATCATTGAGGGTGCAAAGAGAGGACGTGCAATTCTTTTAACAACACATTCAATGGAAGAAGCTGACATCTTAAGTGACCGCATTGGAATCATGGCAAAGGGAAGGCTCCGTTGCATTGGAACCTCAATCAGGTTGAAGTCAAGATTTGGTGCTGGCTTTGTTGCAAATGTTAGTTTTGCAAATGGCAACGGCGGACAGACCCCACCTCCGAATGGAGTGTTGAATACCCCTGCCGACCATGAGGAAATTAAGCAGTTCTTCAAATCTAAATTCTTTGATGAACTTGAGGAGAGAAAGGGAGAGCTTGGAATATCGGATGTCCAACTCAGTCTTACTACCCTTGAAGAAGTTTTCTTGAACATTGCAAAACAAGCAGAGTTGGAAAGTGCTGCAGCTGATGGAACTATGGTGTCACTGACTCTAACAACATCTGGCCACACCGTTGAGATACCAGTAGGATCAAGATTTGTGGGAATTCCAGGGACAGAGACTGCAGAGAATCCAAGCGGGATAATGGTAGAAGTTTACTGGGAACAAGATGATTCAGGTACTCTATGCATATCCGGTCACTCCGACGAAATGCCAGTGCCCCCTAACGTGCAGCCACTGGCTTCGCTGAGATCCCTCTCTTTGAGATCAGCTTCACGGAGACATCGTTTTGGGCAGGGAGGCCCAGTTCATGGTATTGTGTATGATCCTGAACAAGTTGCTGCTCACAGTTCTCGTTGA 2850 44.07 MELRSGFPLLLQQYQALFKKNLLLSWRSKRATFLQLFSSLFFIFLIFCIQKAIEARFSNSTALNDVRNPELQANPPIPPCEDKYYIKLPCYDFVYSGSSSPKVRSIVGAIMANNPGRSIPSSKVLPFGTPAEVDKWLLNNPMTCPGALHFTERNGTVISYGIQTNSTAVARRGQYEDPTFKFQIPLQIAAEREIARSLIGVPNFSWVVNFMEFAHPPVDNFSAVNTVGPTFFLAIAMFGFVLQISSLITEKELKLRQSMTMMGLYDTAYWLSWLTWEGITTLIASLFTVLFGMMFQFDFFSKNNFAVVFLVFFLFQLNMVGFAFMLSAFISKSSSSTTVGFSIFIVGFLTQLVTAFGFPYSADFSKFFQVIWSLFPPNLLAKALSLLSDATSTPGDPGISWSRRTECAPNDTECVITINDIYLWLVGTFFLWFFLAIYLDNVIPNAAGVRKSAFYFLRPGYWTGKGGSKVEEGGICSCFGSLPVLEPTTPDDEDVLEEENTVKRQLSDGIMDSNVAVQISGLAKTYPGAWKANLRCCCKCKKTPPYHAVRGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTGGDALIYGYSVRDSVGMANIRRIIGVCPQFDILWDVLSGQEHLHLFATIKGLPPSSIKSIAEKSLEEVRLTQSAKTRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIEGAKRGRAILLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGAGFVANVSFANGNGGQTPPPNGVLNTPADHEEIKQFFKSKFFDELEERKGELGISDVQLSLTTLEEVFLNIAKQAELESAAADGTMVSLTLTTSGHTVEIPVGSRFVGIPGTETAENPSGIMVEVYWEQDDSGTLCISGHSDEMPVPPNVQPLASLRSLSLRSASRRHRFGQGGPVHGIVYDPEQVAAHSSR 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25291196 25296678 + Lsi06G014810.1 Lsi06g01481 666211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01481 949 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524
Lsi06g01481 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 910 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lsi06g01481 949 Pfam ABC-2 family transporter protein 33 437 - -
Lsi06g01481 949 Pfam ABC transporter 554 694 IPR003439 GO:0005524
Lsi06g01481 949 Gene3D - 513 765 IPR027417 -
Lsi06g01481 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 747 IPR027417 -
Lsi06g01481 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 765 IPR003439 GO:0005524
Lsi06g01481 949 SMART AAA_5 558 742 IPR003593 -
Lsi06g01481 949 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 7 910 - -
Lsi06g01481 949 CDD ABC_subfamily_A 517 753 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01481 - - - mcha:111007040 1697.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00306 Lsi06g01481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01901 Lsi-Chr1:22484726 Lsi06g01481 Lsi-Chr6:25291196 8.81E-51 dispersed
Lsi06g01481 Lsi-Chr6:25291196 Lsi10g00745 Lsi-Chr10:10295824 5.54E-21 dispersed
Lsi06g01480 Lsi-Chr6:25281242 Lsi06g01481 Lsi-Chr6:25291196 1.04E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004576 2 1 3 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01481 Lsi_Chr06 FPKM 1.758023 1.88856 7.470814 7.406286 21.10059 19.777525 19.841526 10.666241 11.45511 10.500787