Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01483 ATGGCGGAGGCTGAAAAAGCTTTGCCAACCATAGATGAAGAAGCTGCTCCCAATAATCCTAAACAAGATGTTCTTCTCAAGGTCCCTTTTATGGGTGACTTGGAAAAGCCGTCCATGGAAAATGTCTCAGTCCCATCAGCTTCTAATTCAACTTGGAAGGAAGAGGATGGCCAGCATTATCATGAAGAAAGAATAAAAAAGACGAGAGTTGAAATGAGAGAAGTAAAGGAAGAAAACGAGAGGCTAAAAAAGAGTTTAGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGACAAATTATCAAATTAGAGAAGGAAAAAAATCAACACAAACAAGTGGAAGTACCATAAATAATAATAATAATAATAATAATAATGATCATGAAGTTGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACACATCAAAATTACAACAACACTACTTCTTCCTCCTCACTTATAACTAAATTAGATCATCCAAAAATCTTAGACCTCAAACAAGATTTTATTATTCAAACCCCATCAATTATTGATCACAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCGAGTAAAATGTCGAAGCCTAGCGGTTTGCCAACGCCCGCCATCGGAGAAGATGATGTTTCTCAGCAAAATCCTCCCAAGAAAGCTAGGGTTTGTGTGAGAGCTCGATTGAAGAAGAATAAAAATGGTGTGCAGATGAACGATGGATGTCAATGGAGAAAATATGGGCAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGATGCACTGGTGCACCCACGTGTCCAGTTAGGAAACAGGTGCAAAGGAGTGTTGATGATATTTCAATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCCGCCGCCGCCTCGATGCTCCTCTCAGGCCCTTCCTCCTCCACCTCTCAACCTGGTCTCAACCCTTCATTCGCCGCTACTGCCGCCGCTGCAAATCTTCAAGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAACCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAATTATCCCCCAAAATATCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAATTTCATGTCATGGAACAACAATAATAATAGTGGTTATAATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGTCATCAGACTTTACCAAACAACTCCCTCTCCATGCTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCTACTCCGCCGCCACAGCCGCCACTACCGGACACGATAGCGGCAGCAACTAAGGTAATTACATCGGACCCGACTTTCCAATCGGCATTGGCGGCTGCCTTGAGCTCGATCATCGGCGGTGGAAATGGCGGCGAGACGGGTCCTATTTCTAGCTTAGTTGGAGGAGCACAAGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGAATAGTAGAGAAAATGGGAAGTGA 1725 41.62 MAEAEKALPTIDEEAAPNNPKQDVLLKVPFMGDLEKPSMENVSVPSASNSTWKEEDGQHYHEERIKKTRVEMREVKEENERLKKSLDEIMKDYETLKRKFHEMTNYQIREGKKSTQTSGSTINNNNNNNNNDHEVEEVDDMVSLTLGRFSTHQNYNNTTSSSSLITKLDHPKILDLKQDFIIQTPSIIDHNIQSPTHSEPKEEEAGQTWPPSKMSKPSGLPTPAIGEDDVSQQNPPKKARVCVRARLKKNKNGVQMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSTSQPGLNPSFAATAAAANLQGMNMYLSNNTNSKQFYLPNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNNYPPKYPFTSLDFGSSQPNFMSWNNNNNSGYNQAYSNISKNNAIIGMSSDFTKQLPLHANIYQAYLQQFSKSSTPPPQPPLPDTIAAATKVITSDPTFQSALAAALSSIIGGGNGGETGPISSLVGGAQAAKSLTCSTSKSPSSSPGNSRENGK 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25303697 25311140 - Lsi06G014830.1 Lsi06g01483 666213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01483 574 MobiDBLite consensus disorder prediction 111 131 - -
Lsi06g01483 574 Pfam WRKY DNA -binding domain 257 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01483 574 ProSiteProfiles WRKY domain profile. 256 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01483 574 Gene3D WRKY domain 241 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01483 574 MobiDBLite consensus disorder prediction 191 237 - -
Lsi06g01483 574 MobiDBLite consensus disorder prediction 37 60 - -
Lsi06g01483 574 Coils Coil 65 99 - -
Lsi06g01483 574 SMART WRKY_cls 256 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01483 574 MobiDBLite consensus disorder prediction 111 133 - -
Lsi06g01483 574 MobiDBLite consensus disorder prediction 1 22 - -
Lsi06g01483 574 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 53 542 - -
Lsi06g01483 574 MobiDBLite consensus disorder prediction 395 416 - -
Lsi06g01483 574 MobiDBLite consensus disorder prediction 555 574 - -
Lsi06g01483 574 SUPERFAMILY WRKY DNA-binding domain 254 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01483 574 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 542 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00307 Lsi06g01483 CCT
Lsi02g00307 Lsi06g01483 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02075 Lsi-Chr4:27910306 Lsi06g01483 Lsi-Chr6:25303697 3.45E-22 dispersed
Lsi05g00196 Lsi-Chr5:2743592 Lsi06g01483 Lsi-Chr6:25303697 1.35E-31 dispersed
Lsi06g01483 Lsi-Chr6:25303697 Lsi11g01439 Lsi-Chr11:22919194 6.69E-51 dispersed
Lsi08g01244 Lsi-Chr8:20940657 Lsi06g01483 Lsi-Chr6:25303697 4.30E-13 dispersed
Lsi02g00307 Lsi-Chr2:2652442 Lsi06g01483 Lsi-Chr6:25303697 1.48E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25544 PF03106 WRKY 1.30E-23 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01483 - - csv:101213180 714.916