Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01484 ATGAGCATTTCCAAAGTGGCTGTTTCTTGTAGTCAAAATTCAGCCACCGGACAGTGTGTTGGGTTTGGCCAGCGTGTGAGTCGGTGCCGCCGCATTCCAGCAGCCGTAACTTGGCCGGGGCGAGGTCGGAGATGGGGTGGGGAGGTTTGTCAGTCGACCGTGGCGATGGATGGGTGCAGAGGAGACGGCGGAGGCACCGTCGGTATAATTGAGACTCGAACTTTTCCGGCAGTTCATACGGCGGCTTTGGCGACGGAGAGTCTGAGGAGAGGAGTGGCTAAGTTGAAATTGGAGGCACCTGCATTAGCTTCAGGGATTATTCGGCTCCAAGTGCCAATCCAACAGTGCATTCAAGCAATTGATTGGCTTTCTTCTCAGCCTCACCTTCTTCCTCGCATCTTCTTCTCCGGCAGAAGCAGAGCCATTGATTCTGCCCACCACACTTCCAATGGCAGCCATCCCTTCGACCATCACCACCTGCTCGGCGTCGCCGGTGTGGGCTCTGCCGTTGTCTTTCGCCGCCTTCATTGCTTTTCGTATAACGATTGGGCGTCTATAAAGAGGTTCTTGTCAAAAAAATACCCCCTGATTCGTGCTTATGGAGTTATTCGCTTTGATTCACGGACCAACATATCGCCTGAGTGGGAGCCCTTTGGATCGTTTTACTTCATGGTCCCTCAGGTTGTACTTGCACGTAGTACCCGAATAGTGACAAGTGTCGATATCGATCCTCTTACATGGGTAGCATGTTTACAGAAAGAGGGAAAAAACTCTTATCAGTTTTGTGTTCAGCCGTCCAATGCTCCTGCCTTCATTGGAAATACGCCTGAGCGACTGTTCCATAGAGAAGGACTTGGCATTAAAAGTGATGCCTTGGCTGCAACCCGTGCTAGAGGCAGATCGGCTCTTGAAGATATTAAAATAGAACATGATTTATTTTCCAACCCAAAGGATGACCTTGAGTTTTCTATTGTGAGGGAAACCATAAAAAAGAAGTTAGAGGCAAGTTTGATCTACAGTCTTGCTCTATTGCTATCTTGCTTTCTGTTGGTGACATCAAATGAAACTTTTACAGCTGTATGTGGTGCGGTAGTCGTTGAACCGCATAAATCAGTGAGAAAACTTCCCAGAATTCAACATTTGTATGCCCAACTGACTGGCAGATTGAGAAGCGAAGAGGATGAGTTTGAAATTTTATCTACGATTCATCCAACTCCCGCGGTCTGTGGATTGCCAACAGAGGAGGCTCGAGATTTAATTTCAGAAACTGAGGTATTTGATAGAGGGATGTACGCAGGGCCTGTTGGCTGGTTTGGAGGAGGAGAGAGTGAGTTTGCTGTAGGCATCAGATCAGCATTAGTGAAGAGAGGTCTTGGAGCCTTGATCTATGCGGGAACAGGGATAGTGAAAGGAAGCAATCCGTCTTCGGAGTGGGATGAATTGGAGCTCAAGATATCACAGATCTGCAGATCACTAGGTCGCTCAAACTAG 1491 48.29 MSISKVAVSCSQNSATGQCVGFGQRVSRCRRIPAAVTWPGRGRRWGGEVCQSTVAMDGCRGDGGGTVGIIETRTFPAVHTAALATESLRRGVAKLKLEAPALASGIIRLQVPIQQCIQAIDWLSSQPHLLPRIFFSGRSRAIDSAHHTSNGSHPFDHHHLLGVAGVGSAVVFRRLHCFSYNDWASIKRFLSKKYPLIRAYGVIRFDSRTNISPEWEPFGSFYFMVPQVVLARSTRIVTSVDIDPLTWVACLQKEGKNSYQFCVQPSNAPAFIGNTPERLFHREGLGIKSDALAATRARGRSALEDIKIEHDLFSNPKDDLEFSIVRETIKKKLEASLIYSLALLLSCFLLVTSNETFTAVCGAVVVEPHKSVRKLPRIQHLYAQLTGRLRSEEDEFEILSTIHPTPAVCGLPTEEARDLISETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVKRGLGALIYAGTGIVKGSNPSSEWDELELKISQICRSLGRSN 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25320379 25327597 + Lsi06G014840.1 Lsi06g01484 666214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01484 496 PANTHER - 228 335 IPR044250 GO:0008909
Lsi06g01484 496 PANTHER ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC 355 492 - -
Lsi06g01484 496 PANTHER ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC 228 335 - -
Lsi06g01484 496 Gene3D Anthranilate synthase 224 495 IPR005801 GO:0009058
Lsi06g01484 496 SUPERFAMILY ADC synthase 152 493 IPR005801 GO:0009058
Lsi06g01484 496 Pfam chorismate binding enzyme 226 335 IPR015890 -
Lsi06g01484 496 Pfam chorismate binding enzyme 355 484 IPR015890 -
Lsi06g01484 496 PANTHER ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC 53 228 - -
Lsi06g01484 496 PANTHER - 53 228 IPR044250 GO:0008909
Lsi06g01484 496 PANTHER - 355 492 IPR044250 GO:0008909
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01484 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] - csv:101218602 442.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00326 Lsi-Chr4:3321980 Lsi06g01484 Lsi-Chr6:25320379 2.14E-10 dispersed
Lsi06g01484 Lsi-Chr6:25320379 Lsi04g00063 Lsi-Chr4:796312 7.16E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g512 . . . . . . . Bma12g01005 . . . Cma11g00162 . Car11g00138 Sed08g0198 . Cpe04g01514 Bhi02g00344 Tan09g2159 Cmetu02g0856 . Hepe09g0136 . . Cla06g01606 Cam06g1780 Cec06g1831 Cco06g1840 Clacu06g1742 Cmu06g1687 Cre06g2503 . . Cone13ag0086 . . . . . . . . . Bpe07g00794 . . . . . Cmo11g00148 . . . . . . . . . . . . . . . . . . . . Lsi06g01484 Csa01g00215 Chy02g02516 Cme02g01902
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010500 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01484 Lsi_Chr06 FPKM 4.253663 4.825966 4.214614 3.657305 6.248516 4.807578 8.920715 3.617858 2.665864 5.850275