Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01488 ATGGGTCTTTTCATTTGGGTCTTCTCTTTGATTTTAGCAGCTACCCTTTTGAGTCACTGCTCCTTCTCTCTCACCGAAGATGGTTTAACATTGTTGGAAATCAAAAGTACTTTAAATGACACTAAGAACGTCCTCAGTAATTGGATCCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGTCATCCCCAGGACTCTCGGGTCAGCTCAATTAATCTACCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTACAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACCTCAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATATTGGAAACCTTTCATACCTTACCATACTTGATTTATCAAGCAATTCCCTCAAGGGCAGTATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACCAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTTTAAGCACCTTTGATAACAACTCGTTCTTTGGCAATCAAGGTCTTTGTGGCCGACAAGTGAACAAGCCATGCCGGACCTCACTGGGGTTTCCTGTCATTTTACCGCATGCTGAAATTCCTGCAAAACGATCCACTCATTACATCAAAGGACTGTTGATTGGTGCAATATCGACAGCGGGGTTTGTGTTGGTCATAGTTATTGTATTCATGTGGACTCGTTTTCTTTCAAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGCGAATCAAGTGCAAAGCTAATTACATTCCATGGCGATCTACCATATCCAACATGTGAGATCATAGAAAAGCTGGAGGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTTTTGGCACCGTGTATCGAATGGTCATGAGCGATTCTGGAGCTTTTGCTGTCAAGAAAATTGATAGGACTCAAGACGGTCCAGATCAAGTAGTAGAAAGAGAATTGGAGATACTGGGTAGCATTAAACACATAAATTTAGTGAAATTGCGTGGTTATTGCAGGCTTCCTTCTTCAAAGCTTCTTATATATGACTATCTGGCGGCGGGTAGCTTGGATGATTTCTTGCACGAACATAGACCAGAAAAGTTTTTGGATTGGAGTGCTCGGTTAAACATAGCGCTAGGCTCTGCTCGAGGATTAGCATACTTGCACCATGATTGCTGTCCAAAGATTGTGCATTGCAACATAAAATCCAGCAATATTCTTCTTGATGGGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCCGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTCGAGCTTGTAACAGGAAAGAGACCAAGTGATCCATTTTTCTCAAAGCGGGGCGTAAATATTGTTGGTTGGTTGAACACACTGAGGGGAGAAGACCAATTGGAGAACATAGTTGATAATAGGTGCCAGAATGCAGATGTCGAAACTGTAGAAGCAATTCTCGAAATAGCGGCAAGGTGCACTGATGGCAACCCGACTATGCGGCCTACAATGAATCAAGTACTGCAGCAGCTAGAGCAAGAGGTTATGTCACCCTACCCGAGCGATTACTCCGAGTCTCACTCGGATTATTCATGA 1788 42.73 MGLFIWVFSLILAATLLSHCSFSLTEDGLTLLEIKSTLNDTKNVLSNWIPSDESPCKWTGISCHPQDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNIGNLSYLTILDLSSNSLKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFDNNSFFGNQGLCGRQVNKPCRTSLGFPVILPHAEIPAKRSTHYIKGLLIGAISTAGFVLVIVIVFMWTRFLSKKERTAKSYMEVKKQKNRESSAKLITFHGDLPYPTCEIIEKLEALNETNVVGSGGFGTVYRMVMSDSGAFAVKKIDRTQDGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLAAGSLDDFLHEHRPEKFLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCQNADVETVEAILEIAARCTDGNPTMRPTMNQVLQQLEQEVMSPYPSDYSESHSDYS 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25343556 25347709 - Lsi06G014880.1 Lsi06g01488 666218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01488 595 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Lsi06g01488 595 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 587 - -
Lsi06g01488 595 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 587 - -
Lsi06g01488 595 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Lsi06g01488 595 Gene3D Phosphorylase Kinase; domain 1 265 381 - -
Lsi06g01488 595 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524
Lsi06g01488 595 Gene3D Transferase(Phosphotransferase) domain 1 382 586 - -
Lsi06g01488 595 Pfam Protein kinase domain 308 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01488 595 SUPERFAMILY L domain-like 25 184 - -
Lsi06g01488 595 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Lsi06g01488 595 ProSiteProfiles Protein kinase domain profile. 306 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01488 595 SUPERFAMILY Protein kinase-like (PK-like) 286 576 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00318 Lsi06g01488 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01967 Lsi-Chr4:26728233 Lsi06g01488 Lsi-Chr6:25343556 2.08E-92 dispersed
Lsi06g01488 Lsi-Chr6:25343556 Lsi08g01665 Lsi-Chr8:24413379 2.75E-104 dispersed
Lsi04g01861 Lsi-Chr4:25741130 Lsi06g01488 Lsi-Chr6:25343556 1.31E-143 transposed
Lsi07g00757 Lsi-Chr7:8257843 Lsi06g01488 Lsi-Chr6:25343556 8.62E-155 transposed
Lsi07g00893 Lsi-Chr7:10214514 Lsi06g01488 Lsi-Chr6:25343556 7.64E-55 transposed
Lsi02g00812 Lsi-Chr2:7570866 Lsi06g01488 Lsi-Chr6:25343556 4.89E-46 transposed
Lsi02g00318 Lsi-Chr2:2728480 Lsi06g01488 Lsi-Chr6:25343556 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83747 PF00069 Pkinase 3.10E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01488 - - csv:101217728 1130.16