Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01491 ATGGAAGAAAAGGGAGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGATTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCAGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAATTCTTGAAGTTTTTGGGGTTCATGTGGAACCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCACTGTTGCTTATCAACTCAACAATTAGTTTTATTGAGGAAAACAATGCCGGTAACGCTGCAGCTGCTCTAATGGCTAGTTTAGCTCCCCAAGCCAAGTCTGCTCTTACAGGCGAGTCTCTTCCTGTTACAAAAGGTCCAGGCGATGGCATATATTCTGGTTCTACTTGTAAACAGGGAGAGATTGAAGCAGTGGTCATTGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGGCACTTCCAAAAGATTCTGAACCTTGCACACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCTGTGATAGGCAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTAGGAAGGAGAGTACTGGAGGTCCATGGCAGTTTGTTGGCCTTCTGCCACTGTTCGACCCACCAAGGCATGACAGTGCAGAGACAATAAGAAGGGCCTTAAATCTTGGAGTGAATGTGAAAATGATTACTGGTGACCAGCTGGCCATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTAGGTCAGGACAAGGATGAGTCTATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCTAGAAAACATATCTGTGGAATGACTGGTGACGGAGTAAATGATGCTCCTGCCCTTAAGAAAGCAGACATAGGGATAGCTGTCGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGACATAGTCCTTACAGAGCCTGGTCTAAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTCCCACCTTTTATGGTGCTTATCATTGCCATTCTCAATGACGGTTTCTTTGTGACTACAGGTACAATAATGACGATATCGAAGGATAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCTGAAATTTTTACAACTGGCATTATACTTGGTGGCTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCAGCCTATAAGACAAACTTTTTTCCACGAGTCTTTGGGGTGGCAACTCTCGAGAAAACTGCTCATGATGACATCAGGAAACTGGCCTCAGCGATATATCTGCAAGTAAGCACTATAAGTCAGGCTCTCATATTTGTTACTCGCTCTCGAAGTTGGTCTTATGTGGAACGTCCTGGGTTATTACTGGTTGCGGCTTTTCTGGTTGCACAGCTGATTGCTACTTTAATTGCGGTTTATGCAAATTGGAGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATTTGGCTTTACAACATTATCTTTTACATCCCACTTGATCCCATTAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAGAGGATTGCCTTTACAAGGCAAAAGGACTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCCGATGCCAAAATGTTCCACGACCGAACTCACTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTATGCACTGAACCTGAAGAACTAA 2121 44.46 MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKILNLAHNKSEIERKVHAVIGKFAERGLRSLAVAYQEVPDGRKESTGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGFFVTTGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTNFFPRVFGVATLEKTAHDDIRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARYALNLKN 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25366643 25374839 - Lsi06G014910.1 Lsi06g01491 666221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01491 706 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Lsi06g01491 706 Pfam E1-E2 ATPase 140 204 - -
Lsi06g01491 706 Gene3D - 194 258 IPR023299 GO:0000166
Lsi06g01491 706 Gene3D - 143 193 - -
Lsi06g01491 706 Pfam haloacid dehalogenase-like hydrolase 210 372 - -
Lsi06g01491 706 SUPERFAMILY HAD-like 250 404 IPR036412 -
Lsi06g01491 706 PANTHER PLASMA MEMBRANE ATPASE 1 200 702 - -
Lsi06g01491 706 PRINTS H+-transporting ATPase (proton pump) signature 215 233 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01491 706 PRINTS H+-transporting ATPase (proton pump) signature 330 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01491 706 PRINTS H+-transporting ATPase (proton pump) signature 389 414 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01491 706 PRINTS H+-transporting ATPase (proton pump) signature 540 561 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01491 706 PRINTS H+-transporting ATPase (proton pump) signature 358 374 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01491 706 PANTHER PLASMA MEMBRANE ATPASE 1 6 140 - -
Lsi06g01491 706 PANTHER PLASMA MEMBRANE ATPASE 1 140 202 - -
Lsi06g01491 706 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Lsi06g01491 706 Gene3D - 71 142 - -
Lsi06g01491 706 Gene3D - 360 626 - -
Lsi06g01491 706 SUPERFAMILY Calcium ATPase, transduction domain A 140 189 IPR008250 -
Lsi06g01491 706 Gene3D - 679 702 - -
Lsi06g01491 706 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 333 446 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01491 706 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 627 IPR023298 -
Lsi06g01491 706 PANTHER CALCIUM-TRANSPORTING ATPASE 6 140 - -
Lsi06g01491 706 PANTHER CALCIUM-TRANSPORTING ATPASE 140 202 - -
Lsi06g01491 706 PANTHER CALCIUM-TRANSPORTING ATPASE 200 702 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00322 Lsi06g01491 CCT
Lsi02g00322 Lsi06g01491 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01491 Lsi-Chr6:25366643 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi02g00322 Lsi-Chr2:2742661 Lsi06g01491 Lsi-Chr6:25366643 0 wgd
Lsi02g01502 Lsi-Chr2:20847413 Lsi06g01491 Lsi-Chr6:25366643 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01491 K01535 - aof:109839442 971.074