Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01494 ATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCAAACAGTGCCAGATCATTTTTTCTTAGTGGATCACGATGTAATGCAGACGGGACTTCATGCACATGCCCTGAAGATGAAACTTGTGTTTCCCAGAGACAAAATGCTAGAAATGAAATCCTGCCCTCACAAAAGCCATCCACCTTGGTAGCTAATAGTTCGCCTAGAGTAGGACCTTTAATTGCAGAAGAAGCAGCAAAAGTAACTGTATCTCACAAAACTGACAATGTTGATCTCTCAGTTTCCATACGACAAGTTAGGAACACTGGCCCCAATCACCAGAGGGGAGCAGAATGTGTAAGATACGCCAGTGGCCTTAACACTCTTCTGGATGGTGAGTGCACTTCACCAAAGATTGCAGATCAGGTTGTGAAGGCAGGTATTATGGCTGTAAACTTATTCTCTGACTTTGTGAATTTTAAAGTCCCCTTATCTGACTATGGTGGAACGTTTAGCTCATCTAAGAATTGCATGGTTGATCCTGCTCGGTCCATTACTTCTGTCAAACCCTCAAAAATCAAACATTTGAGAAGAGAGAACATTTCTAGTGTTCATTCCAGGCCATCTGTTGAAATCCCTGTAGATTCTAATCCCCGAAGTAGCAGTAACCATCATGGTCCAAACTGCAAGGCCATGCAATCCAATTATGTTAAAGGTTCAAAGCAAGTTCCCGAGGCCAGAACACAAAAGTCAGTGGTATCTCACAATATATCCTCAGACAAGTGTGATAAAAGGACTTTACCACATAGAACAAGGATTCATTCAAACAGCTTTACTTCACATTTTCATTCCAATGCACAAACCACAGGTTCAGAGTTCACAAATTCTTCTAAGAATTTGATAAAGCTTCCAGATAATGTAAAAAGCTCAATAGGAATGGCACCAATCCCTCCACCATTTTTGAATACCCCACATGTTGTGGAAAGTGTTTCCTGCATATTGCAACAACTTAAATGGGGCCCTGCTGCAGAAGAGGCTATTGGGAAATTGAACTATTCAATAGATGCTTACCAGGCAAACCAAATTCTGAAGCGGGTAGATGACCACTCTGTTGCTCTTGGATTCTTTTATTGGTTAAAGCGCCTAGCCAGGTTTAGACATGATGGCCACACTTATACTACTATGATTGGCCTCCTTGGTCGTGCCAAACAGTTTGCTGCTATAAATAGATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACATATAATCGTATAATTCATAGTTATGGTCGTGCAAACTATTTGCAAGAAGCCGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTGAGCCTGATAGAGTCACCTACTGCACACTCATTGACATTCATGCAAAATCTGGCTTTCTTGATGTTGCCATGGGCATGTATGAGAAGATGCAAGAGGCTGGCCTCACTCCCGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGTCGGATGGTCGATCAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTACCGTGATATGCAACAATCAGGCTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTAGGTCATTGTGGTTTCCTTGAGGAGACAGAAGGTATATTTATTGAGATGCAAAAGAAGAACTGGGTGCCTGATGAACCTGTTTATGGTCTATTAGTGGACTTGTGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAATTCGGGTTTAAAGCCAAATGTGCCTACTTGCAATTCCTTGCTTAGTGCCTTTCTTAGGGTACATCAACTATCAGATGCCTATCAGCTATTACAATCCATGCTGACTTTTGGTTTAAAACCTTCTCTACAAACTTATACCTTGCTTCTCAGTTGTTGCACTGATGCACAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACTGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCCGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGACAGAGAGAGCAAGAGGGGGCTCGTGGATGCAGTTGTAGATTTTCTTCATAAATCAGGACTCAAGGAGGAGGCAGGCTGCGTCTGGGAGGCTGCTATGCAAAAGAATGTCTATCCAGATGCTGTAAAGGAGAAAAGCTCCTGTTATTGGCTCATTAACTTGCACGTCATGTCTGATGGCACCGCCGTGACAGCTTTGTCTAGGACTCTAGCTTGGTTTCGCCAGCAAATGCTTCTTTCGGGTGTCGGTCCCAACCGAATTGATATTGTGACTGGATGGGGTCGGCGAAGTAAGGTCACTGGATCTTCTCTAGTGAGGCAGGCAGTTCAAGACCTGTTGAGCATTTTTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTGGGGTGTGGGGAGCCTCTAAGTAGATGGTTGAACCAATCTTATGTGGAGAGGATGCATTTGTTGTAG 2625 43.01 MLRAKQIGSLSNSARSFFLSGSRCNADGTSCTCPEDETCVSQRQNARNEILPSQKPSTLVANSSPRVGPLIAEEAAKVTVSHKTDNVDLSVSIRQVRNTGPNHQRGAECVRYASGLNTLLDGECTSPKIADQVVKAGIMAVNLFSDFVNFKVPLSDYGGTFSSSKNCMVDPARSITSVKPSKIKHLRRENISSVHSRPSVEIPVDSNPRSSSNHHGPNCKAMQSNYVKGSKQVPEARTQKSVVSHNISSDKCDKRTLPHRTRIHSNSFTSHFHSNAQTTGSEFTNSSKNLIKLPDNVKSSIGMAPIPPPFLNTPHVVESVSCILQQLKWGPAAEEAIGKLNYSIDAYQANQILKRVDDHSVALGFFYWLKRLARFRHDGHTYTTMIGLLGRAKQFAAINRLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQEAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEETEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLNSGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLLSGVGPNRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLNQSYVERMHLL 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25399884 25403644 + Lsi06G014940.1 Lsi06g01494 666224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01494 874 MobiDBLite consensus disorder prediction 190 256 - -
Lsi06g01494 874 PANTHER OS03G0856100 PROTEIN 1 874 - -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 626 658 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 380 414 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 555 589 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 520 553 IPR002885 -
Lsi06g01494 874 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Lsi06g01494 874 SUPERFAMILY SMR domain-like 772 852 IPR036063 -
Lsi06g01494 874 Pfam PPR repeat family 412 458 IPR002885 -
Lsi06g01494 874 Pfam PPR repeat family 517 563 IPR002885 -
Lsi06g01494 874 Pfam PPR repeat family 622 669 IPR002885 -
Lsi06g01494 874 Gene3D Tetratricopeptide repeat domain 475 548 IPR011990 GO:0005515
Lsi06g01494 874 Gene3D Tetratricopeptide repeat domain 331 474 IPR011990 GO:0005515
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Lsi06g01494 874 Gene3D - 751 853 IPR036063 -
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Lsi06g01494 874 MobiDBLite consensus disorder prediction 195 246 - -
Lsi06g01494 874 Pfam PPR repeat 591 620 IPR002885 -
Lsi06g01494 874 Pfam PPR repeat 381 410 IPR002885 -
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lsi06g01494 874 Gene3D Tetratricopeptide repeat domain 559 677 IPR011990 GO:0005515
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Lsi06g01494 874 ProSiteProfiles Smr domain profile. 774 855 IPR002625 -
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Lsi06g01494 874 Pfam PPR repeat 479 511 IPR002885 -
Lsi06g01494 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Lsi06g01494 874 PANTHER BNAA07G31720D PROTEIN 1 874 - -
Lsi06g01494 874 SMART SMR_2 771 857 IPR002625 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01494 - - - csv:101217022 1665.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00467 Lsi-Chr3:5266274 Lsi06g01494 Lsi-Chr6:25399884 9.22E-42 dispersed
Lsi06g01494 Lsi-Chr6:25399884 Lsi03g00562 Lsi-Chr3:6800887 2.70E-27 dispersed
Lsi10g00641 Lsi-Chr10:8923957 Lsi06g01494 Lsi-Chr6:25399884 1.77E-07 dispersed
Lsi06g01494 Lsi-Chr6:25399884 Lsi11g00767 Lsi-Chr11:8644061 6.25E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01494 Lsi_Chr06 FPKM 5.175926 6.102178 0.138971 0.535389 0.0 0.0 0.250525 0.0 0.169405 0.0