Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01495 | ATGGCGCGCAAGAAGAAAAACACTGATCCGCGAGCTAAACAATCTCCAGCGGGTCCAAGTGTGTCGAACATCGCGGAAAAGAGTTCAGTATCTAACAAGTCAAGTAATCAGAACCAAAGTAAGATTGAGCTAGTGGGAATCAGTGAATCGGATGGTTTGTCTTCTTCTACAATTAAACTCGAATGCGAGAAGGCTCTTACTACGATTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAATTGAGTTCAAGAAATGAGAACTCTATTCACTCAGCATTGATTCATAGGGTTCAGGGTACTATTTTTGTAAAAGTAGCATCGATTATTGATGACCTGAATACAAAGCAGCGACATTTGAAGAATGCGATTGAGTCCGCTCGTAGAGCAGTCCAGCTCTCACCAAACTCGATTGAGTTTTCTCATTTTTATGCAAACTTGCTTTACGAGGCTGCTAATGATGCCAAGGAGTACGAGGAGGTGGTGCGAGAATGTGAGCGGGCCCTTGGAATTGAAAACCCAATTGATCCCGCTAAAGAAAGCTTGCAAGATGAAAAGAGTCAGAAAATACCTACGGCAGAAGCAAGGATTATGCACGTTCAGACGGAATTGAGGCAGTTGATTCAAAAATCAAATATATACTCCATATCGTCTTGGATGAAGAACTTGGGTAATGGGGAGGAGAAGTTTAGGTTAATTCCGATTAGAAGAGTGGCAGAGGACCCAATGGAGGTGAGGATGGTTCAAGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAGGAGCGAAGGAAGGAGATCGAAGTCCGTGTCGCTGCTGCAAGGCTGGTGCAACAGAAGTCTGAGACACCTCAAATGCAGAAGGAAGGAGGTAAAGCTGATCGAATCCCAGATTCATCTTCAGTGCTTGGTACAAGAGTTAGTGAGCGGCGGAAACATGACAATGTCCGGAAACTTGGTTCTTCAACTGAAAGAAAGAATTGGGTTCGTTCGTTTTGGAGTTCTATGAGTACAGAATCGAAGAAAGAATTGCTCAAGATCAAGATTAGTGATCTTGAGACTCATTTTAGTTCTTCAAAGGATGCCTTGGCAAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATCACGCCAATAAAACATGGAAATTCTGGGTTTGCTGCAAATGTGACAAGAAATCTGTGGATTCGGAATCCCATATGCACCACGTGGTACAGGAACACCTGGGAAACCTTTTGCCGAAAATGCAATCTATCTTGCCACATAATGTCGATAATGATTGGAGTGAAATGCTTCTTAATTGCTCTTGGAAACCATTGGATGTTTCAACTACAGCTAAAATGCTCACAGATCAAACAAAATGCAAAGGTTCCGAGTTGGCTGAAGATATCGACCCACAACATCATTCACAACGTGATGAGTGTTTCAAAGATCCATGGGATTCTTCTTCAGAGAAGCATGATTATGGGAATAGTTTAAATGAATTCAATCTTTATGAGAAAATTAGCAACAGCGGATTTCCAGTACCTAATAGTTTTCCAGTATCTGATGACTCTGAGCGTACAAAGCTGCTTGAGAAAATTCATGCAATATTTGAGTTACTTGTTAAACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAGTTTACAATGGATGAGTTACAAGGTCTTGTTTCTAGATCTCATCTTCTAAAGCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGTGCTTCTCCGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCACTCTTGTGGTGTAGGTAGATATTCTGATAGAAGTACTGATCAAATTGAAGATCCAAAGAGTGACAAACAAGTTGTTGATGTTGAAGAGAAAATTGTTCTCAATGGAGATGCGTCACTTCTCCTTCTTAATGAGTGTTTGTTGTCATCTGATATCCCTCATGCTAGTGATCAGGTTGCTGCCTCAGATCAGATGTCTGTTGCAATTGCCAAGAATGCTGCAAATGAGGTTCTTTCTTATGTTGATCCTTTCCTATCCTGGGTATATGTAGGTCCCTCTAGTGGGCAACAGTTAGCATCATGGGCACAAACAAAGGAAGAAAAGACACAACGACGAATGGAAATTTTTCAGACGCTTGAGAAAGAATTTTACACTTTACAGAACCTCTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCATTGCAGTCAGTGGAGGATCTCTGCCTTGAAGAAGGCAAGAAGAGGGAAGCTATGATTGAATTTATCCCCAAGAGTTTTGAGTCAGTCCTGAGGAAACGAAGAGAGGAGCTTATCGAGGCTGAAAATGATGCGATGTATATTGGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTTTGAAAGAAGCCGAAGCCCTGAATGTTAATCAACTTGGATATGAGGAAACTTTTGGCAGTGTGTCTTCTCAGTTATATGATTTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGAATATTTGCATCAAGTCGATACTTGTATAGAAGTTGCAATAAAGAGACAGAAAGAACAACTATCTATTGAGATTAGCAAAATTGATGCACGCATCATGCGAATTGTTAATGGAATGCAAGAGTTGGAACTTAAGCTCGAGCCTGTTTCGGCACATGACTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATCTAGAAGATTTGGCTGAAAAAGATGTCACAAAGAAGTCTGATGCTGCAAGCGAAGCATTATTAGCTGAACTGGCACTGGATTCAAAAAAGGGTGTCAGAGGTGGAAGTGATAATTCAAAACATGCACATGAAAAGCCGAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGCCAAGGACTCTAAGGTGGTTAGTGCTCCTGAGCAGGATGTGCTTCATGATGAGGTTGTTGATGGAGGTCCTTATCAAGTTCCATCTGATGGTGATGCGGCAGAGGTGGACATTGCTGTTACTGAAAACTCTGACGCTTTAAGACTACAGGAGGAAGAGATAAGACGCAAAATTGAGCTTGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAATTACAAAAGAAATCTGCACAGACAAATCTAGAGGATAAAGTTGCTCTGGCAGTGCATGATAATCTCATTGGACTCGTCCCCAGTGTTGAGGGTGTTGATGAGCATTTTAAGCCCTCTGTGGTGGATCAATTGGCAGAAAGTGAATTGGTTCCTGACTTGTCAACACCGAAGGCTTATTCAGGTGCATCCAATGTAGTAAATATAGAGAATAGCCTGCCATCTTCTGATAGGAGGAGGGGGAGGAAAGGTAGACGGCACAAGGCTTCAATCAAACCAGCAGATGGAAATCAGCTTTCACAATCTGAGAAGGATAATGTAGGCTTTGACAACCAATTGAATGAGCAAGTTAGACATCATGACAATCTCCTAGTAGATAGTGTTAATCCACTTTCTGAAGATAATAGTACAAAGACTTTGAGACAACGACATGCAGCAGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAAAAGCAGAAATTGCCTGTGATTACAAGTTCCAGGACACCATTGATCAGTTGTGGTGAAGTAGACAGTAGTGATCTTCCATCAAATGAACTCAATGTAGATAATGTGCAGGGAGTAGATATTTGTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTTTGAATGTGATTATTCAGTCCTTGTGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTTGCTGCCTTGAGCGTGGCATCTGCAGATGCTAGAAGAGAAGCAGTTGCCCCCACTTCTTTAAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTTTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCGGTCATATTTGATTGCTTACACCAGTCGTTGACTCCTAGTTCGAGCATTTCTGATACAGAATCAGTAGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACAGTTGTTTGGTACATTCCATCTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACCTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTGGAAATGAATCATCAGCTAGCTTGCGATTTGGATGTCGGTGGTTGCGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAATGCTGATGACATAACCGCGACATTAGCTGCTCTGAATACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGACTACACATAATTTGGTATCAGTGGTTTGCTATTATGGTCAGCACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAAAGTATGATGATAGAACTGTTAAGGTAATTGGCGGCTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG | 4800 | 41.46 | MARKKKNTDPRAKQSPAGPSVSNIAEKSSVSNKSSNQNQSKIELVGISESDGLSSSTIKLECEKALTTIRRGNHTKALRLMKELSSRNENSIHSALIHRVQGTIFVKVASIIDDLNTKQRHLKNAIESARRAVQLSPNSIEFSHFYANLLYEAANDAKEYEEVVRECERALGIENPIDPAKESLQDEKSQKIPTAEARIMHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVAEDPMEVRMVQARRANEIKKATKTPEERRKEIEVRVAAARLVQQKSETPQMQKEGGKADRIPDSSSVLGTRVSERRKHDNVRKLGSSTERKNWVRSFWSSMSTESKKELLKIKISDLETHFSSSKDALANEVISEALSFYHANKTWKFWVCCKCDKKSVDSESHMHHVVQEHLGNLLPKMQSILPHNVDNDWSEMLLNCSWKPLDVSTTAKMLTDQTKCKGSELAEDIDPQHHSQRDECFKDPWDSSSEKHDYGNSLNEFNLYEKISNSGFPVPNSFPVSDDSERTKLLEKIHAIFELLVKHKYLAASHLNKVIQFTMDELQGLVSRSHLLKQGLDQTPLCICFLGASPLRKILKFLQELSHSCGVGRYSDRSTDQIEDPKSDKQVVDVEEKIVLNGDASLLLLNECLLSSDIPHASDQVAASDQMSVAIAKNAANEVLSYVDPFLSWVYVGPSSGQQLASWAQTKEEKTQRRMEIFQTLEKEFYTLQNLCERKCEHLNYEEALQSVEDLCLEEGKKREAMIEFIPKSFESVLRKRREELIEAENDAMYIGSRFELDAVTNVLKEAEALNVNQLGYEETFGSVSSQLYDLESGEDEDWRAKEYLHQVDTCIEVAIKRQKEQLSIEISKIDARIMRIVNGMQELELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDVTKKSDAASEALLAELALDSKKGVRGGSDNSKHAHEKPKEKKRSKEFRKAKDSKVVSAPEQDVLHDEVVDGGPYQVPSDGDAAEVDIAVTENSDALRLQEEEIRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEDKVALAVHDNLIGLVPSVEGVDEHFKPSVVDQLAESELVPDLSTPKAYSGASNVVNIENSLPSSDRRRGRKGRRHKASIKPADGNQLSQSEKDNVGFDNQLNEQVRHHDNLLVDSVNPLSEDNSTKTLRQRHAADDEERFQADLKKAVRQSLDAFQEKQKLPVITSSRTPLISCGEVDSSDLPSNELNVDNVQGVDICGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALSVASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSISDTESVESNCMGSWDCASDSCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCENADDITATLAALNTEIDISVLYRGLDPKTTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN | 1599 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25404929 | 25413676 | + | Lsi06G014950.1 | Lsi06g01495 | 666225 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 310 | 324 | - | - | |
Lsi06g01495 | 1599 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 45 | 1599 | - | - | |
Lsi06g01495 | 1599 | Pfam | Protein of unknown function (DUF627) | 64 | 174 | IPR006866 | - | |
Lsi06g01495 | 1599 | Gene3D | Cysteine proteinases | 1257 | 1599 | - | - | |
Lsi06g01495 | 1599 | Coils | Coil | 150 | 170 | - | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 1181 | 1201 | - | - | |
Lsi06g01495 | 1599 | PANTHER | INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE | 45 | 1599 | - | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 943 | 982 | - | - | |
Lsi06g01495 | 1599 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1266 | 1598 | IPR028889 | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lsi06g01495 | 1599 | Coils | Coil | 1017 | 1066 | - | - | |
Lsi06g01495 | 1599 | Gene3D | Tetratricopeptide repeat domain | 48 | 183 | IPR011990 | GO:0005515 | |
Lsi06g01495 | 1599 | Coils | Coil | 112 | 132 | - | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 13 | 38 | - | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 1120 | 1159 | - | - | |
Lsi06g01495 | 1599 | Pfam | Protein of unknown function (DUF629) | 334 | 853 | IPR006865 | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 285 | 324 | - | - | |
Lsi06g01495 | 1599 | CDD | Peptidase_C19 | 1358 | 1596 | - | - | |
Lsi06g01495 | 1599 | SUPERFAMILY | Cysteine proteinases | 1266 | 1596 | IPR038765 | - | |
Lsi06g01495 | 1599 | MobiDBLite | consensus disorder prediction | 941 | 982 | - | - | |
Lsi06g01495 | 1599 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1267 | 1574 | IPR001394 | GO:0004843|GO:0016579 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01433 | Lsi-Chr6:24864910 | Lsi06g01495 | Lsi-Chr6:25404929 | 8.21E-47 | dispersed | |
Lsi06g01495 | Lsi-Chr6:25404929 | Lsi11g00675 | Lsi-Chr11:7112378 | 1.84E-06 | dispersed | |
Lsi06g01492 | Lsi-Chr6:25393824 | Lsi06g01495 | Lsi-Chr6:25404929 | 1.34E-16 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01495 | - | - | mcha:111007268 | 2616.26 |