Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01495 ATGGCGCGCAAGAAGAAAAACACTGATCCGCGAGCTAAACAATCTCCAGCGGGTCCAAGTGTGTCGAACATCGCGGAAAAGAGTTCAGTATCTAACAAGTCAAGTAATCAGAACCAAAGTAAGATTGAGCTAGTGGGAATCAGTGAATCGGATGGTTTGTCTTCTTCTACAATTAAACTCGAATGCGAGAAGGCTCTTACTACGATTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAATTGAGTTCAAGAAATGAGAACTCTATTCACTCAGCATTGATTCATAGGGTTCAGGGTACTATTTTTGTAAAAGTAGCATCGATTATTGATGACCTGAATACAAAGCAGCGACATTTGAAGAATGCGATTGAGTCCGCTCGTAGAGCAGTCCAGCTCTCACCAAACTCGATTGAGTTTTCTCATTTTTATGCAAACTTGCTTTACGAGGCTGCTAATGATGCCAAGGAGTACGAGGAGGTGGTGCGAGAATGTGAGCGGGCCCTTGGAATTGAAAACCCAATTGATCCCGCTAAAGAAAGCTTGCAAGATGAAAAGAGTCAGAAAATACCTACGGCAGAAGCAAGGATTATGCACGTTCAGACGGAATTGAGGCAGTTGATTCAAAAATCAAATATATACTCCATATCGTCTTGGATGAAGAACTTGGGTAATGGGGAGGAGAAGTTTAGGTTAATTCCGATTAGAAGAGTGGCAGAGGACCCAATGGAGGTGAGGATGGTTCAAGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAGGAGCGAAGGAAGGAGATCGAAGTCCGTGTCGCTGCTGCAAGGCTGGTGCAACAGAAGTCTGAGACACCTCAAATGCAGAAGGAAGGAGGTAAAGCTGATCGAATCCCAGATTCATCTTCAGTGCTTGGTACAAGAGTTAGTGAGCGGCGGAAACATGACAATGTCCGGAAACTTGGTTCTTCAACTGAAAGAAAGAATTGGGTTCGTTCGTTTTGGAGTTCTATGAGTACAGAATCGAAGAAAGAATTGCTCAAGATCAAGATTAGTGATCTTGAGACTCATTTTAGTTCTTCAAAGGATGCCTTGGCAAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATCACGCCAATAAAACATGGAAATTCTGGGTTTGCTGCAAATGTGACAAGAAATCTGTGGATTCGGAATCCCATATGCACCACGTGGTACAGGAACACCTGGGAAACCTTTTGCCGAAAATGCAATCTATCTTGCCACATAATGTCGATAATGATTGGAGTGAAATGCTTCTTAATTGCTCTTGGAAACCATTGGATGTTTCAACTACAGCTAAAATGCTCACAGATCAAACAAAATGCAAAGGTTCCGAGTTGGCTGAAGATATCGACCCACAACATCATTCACAACGTGATGAGTGTTTCAAAGATCCATGGGATTCTTCTTCAGAGAAGCATGATTATGGGAATAGTTTAAATGAATTCAATCTTTATGAGAAAATTAGCAACAGCGGATTTCCAGTACCTAATAGTTTTCCAGTATCTGATGACTCTGAGCGTACAAAGCTGCTTGAGAAAATTCATGCAATATTTGAGTTACTTGTTAAACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAGTTTACAATGGATGAGTTACAAGGTCTTGTTTCTAGATCTCATCTTCTAAAGCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGTGCTTCTCCGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCACTCTTGTGGTGTAGGTAGATATTCTGATAGAAGTACTGATCAAATTGAAGATCCAAAGAGTGACAAACAAGTTGTTGATGTTGAAGAGAAAATTGTTCTCAATGGAGATGCGTCACTTCTCCTTCTTAATGAGTGTTTGTTGTCATCTGATATCCCTCATGCTAGTGATCAGGTTGCTGCCTCAGATCAGATGTCTGTTGCAATTGCCAAGAATGCTGCAAATGAGGTTCTTTCTTATGTTGATCCTTTCCTATCCTGGGTATATGTAGGTCCCTCTAGTGGGCAACAGTTAGCATCATGGGCACAAACAAAGGAAGAAAAGACACAACGACGAATGGAAATTTTTCAGACGCTTGAGAAAGAATTTTACACTTTACAGAACCTCTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCATTGCAGTCAGTGGAGGATCTCTGCCTTGAAGAAGGCAAGAAGAGGGAAGCTATGATTGAATTTATCCCCAAGAGTTTTGAGTCAGTCCTGAGGAAACGAAGAGAGGAGCTTATCGAGGCTGAAAATGATGCGATGTATATTGGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTTTGAAAGAAGCCGAAGCCCTGAATGTTAATCAACTTGGATATGAGGAAACTTTTGGCAGTGTGTCTTCTCAGTTATATGATTTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGAATATTTGCATCAAGTCGATACTTGTATAGAAGTTGCAATAAAGAGACAGAAAGAACAACTATCTATTGAGATTAGCAAAATTGATGCACGCATCATGCGAATTGTTAATGGAATGCAAGAGTTGGAACTTAAGCTCGAGCCTGTTTCGGCACATGACTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATCTAGAAGATTTGGCTGAAAAAGATGTCACAAAGAAGTCTGATGCTGCAAGCGAAGCATTATTAGCTGAACTGGCACTGGATTCAAAAAAGGGTGTCAGAGGTGGAAGTGATAATTCAAAACATGCACATGAAAAGCCGAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGCCAAGGACTCTAAGGTGGTTAGTGCTCCTGAGCAGGATGTGCTTCATGATGAGGTTGTTGATGGAGGTCCTTATCAAGTTCCATCTGATGGTGATGCGGCAGAGGTGGACATTGCTGTTACTGAAAACTCTGACGCTTTAAGACTACAGGAGGAAGAGATAAGACGCAAAATTGAGCTTGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAATTACAAAAGAAATCTGCACAGACAAATCTAGAGGATAAAGTTGCTCTGGCAGTGCATGATAATCTCATTGGACTCGTCCCCAGTGTTGAGGGTGTTGATGAGCATTTTAAGCCCTCTGTGGTGGATCAATTGGCAGAAAGTGAATTGGTTCCTGACTTGTCAACACCGAAGGCTTATTCAGGTGCATCCAATGTAGTAAATATAGAGAATAGCCTGCCATCTTCTGATAGGAGGAGGGGGAGGAAAGGTAGACGGCACAAGGCTTCAATCAAACCAGCAGATGGAAATCAGCTTTCACAATCTGAGAAGGATAATGTAGGCTTTGACAACCAATTGAATGAGCAAGTTAGACATCATGACAATCTCCTAGTAGATAGTGTTAATCCACTTTCTGAAGATAATAGTACAAAGACTTTGAGACAACGACATGCAGCAGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAAAAGCAGAAATTGCCTGTGATTACAAGTTCCAGGACACCATTGATCAGTTGTGGTGAAGTAGACAGTAGTGATCTTCCATCAAATGAACTCAATGTAGATAATGTGCAGGGAGTAGATATTTGTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTTTGAATGTGATTATTCAGTCCTTGTGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTTGCTGCCTTGAGCGTGGCATCTGCAGATGCTAGAAGAGAAGCAGTTGCCCCCACTTCTTTAAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTTTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCGGTCATATTTGATTGCTTACACCAGTCGTTGACTCCTAGTTCGAGCATTTCTGATACAGAATCAGTAGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACAGTTGTTTGGTACATTCCATCTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACCTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTGGAAATGAATCATCAGCTAGCTTGCGATTTGGATGTCGGTGGTTGCGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAATGCTGATGACATAACCGCGACATTAGCTGCTCTGAATACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGACTACACATAATTTGGTATCAGTGGTTTGCTATTATGGTCAGCACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAAAGTATGATGATAGAACTGTTAAGGTAATTGGCGGCTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4800 41.46 MARKKKNTDPRAKQSPAGPSVSNIAEKSSVSNKSSNQNQSKIELVGISESDGLSSSTIKLECEKALTTIRRGNHTKALRLMKELSSRNENSIHSALIHRVQGTIFVKVASIIDDLNTKQRHLKNAIESARRAVQLSPNSIEFSHFYANLLYEAANDAKEYEEVVRECERALGIENPIDPAKESLQDEKSQKIPTAEARIMHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVAEDPMEVRMVQARRANEIKKATKTPEERRKEIEVRVAAARLVQQKSETPQMQKEGGKADRIPDSSSVLGTRVSERRKHDNVRKLGSSTERKNWVRSFWSSMSTESKKELLKIKISDLETHFSSSKDALANEVISEALSFYHANKTWKFWVCCKCDKKSVDSESHMHHVVQEHLGNLLPKMQSILPHNVDNDWSEMLLNCSWKPLDVSTTAKMLTDQTKCKGSELAEDIDPQHHSQRDECFKDPWDSSSEKHDYGNSLNEFNLYEKISNSGFPVPNSFPVSDDSERTKLLEKIHAIFELLVKHKYLAASHLNKVIQFTMDELQGLVSRSHLLKQGLDQTPLCICFLGASPLRKILKFLQELSHSCGVGRYSDRSTDQIEDPKSDKQVVDVEEKIVLNGDASLLLLNECLLSSDIPHASDQVAASDQMSVAIAKNAANEVLSYVDPFLSWVYVGPSSGQQLASWAQTKEEKTQRRMEIFQTLEKEFYTLQNLCERKCEHLNYEEALQSVEDLCLEEGKKREAMIEFIPKSFESVLRKRREELIEAENDAMYIGSRFELDAVTNVLKEAEALNVNQLGYEETFGSVSSQLYDLESGEDEDWRAKEYLHQVDTCIEVAIKRQKEQLSIEISKIDARIMRIVNGMQELELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDVTKKSDAASEALLAELALDSKKGVRGGSDNSKHAHEKPKEKKRSKEFRKAKDSKVVSAPEQDVLHDEVVDGGPYQVPSDGDAAEVDIAVTENSDALRLQEEEIRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEDKVALAVHDNLIGLVPSVEGVDEHFKPSVVDQLAESELVPDLSTPKAYSGASNVVNIENSLPSSDRRRGRKGRRHKASIKPADGNQLSQSEKDNVGFDNQLNEQVRHHDNLLVDSVNPLSEDNSTKTLRQRHAADDEERFQADLKKAVRQSLDAFQEKQKLPVITSSRTPLISCGEVDSSDLPSNELNVDNVQGVDICGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALSVASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSISDTESVESNCMGSWDCASDSCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCENADDITATLAALNTEIDISVLYRGLDPKTTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN 1599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25404929 25413676 + Lsi06G014950.1 Lsi06g01495 666225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 310 324 - -
Lsi06g01495 1599 PANTHER UBIQUITIN SPECIFIC PROTEINASE 45 1599 - -
Lsi06g01495 1599 Pfam Protein of unknown function (DUF627) 64 174 IPR006866 -
Lsi06g01495 1599 Gene3D Cysteine proteinases 1257 1599 - -
Lsi06g01495 1599 Coils Coil 150 170 - -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 1181 1201 - -
Lsi06g01495 1599 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 45 1599 - -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 943 982 - -
Lsi06g01495 1599 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1266 1598 IPR028889 -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 1 38 - -
Lsi06g01495 1599 Coils Coil 1017 1066 - -
Lsi06g01495 1599 Gene3D Tetratricopeptide repeat domain 48 183 IPR011990 GO:0005515
Lsi06g01495 1599 Coils Coil 112 132 - -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 13 38 - -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 1120 1159 - -
Lsi06g01495 1599 Pfam Protein of unknown function (DUF629) 334 853 IPR006865 -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 285 324 - -
Lsi06g01495 1599 CDD Peptidase_C19 1358 1596 - -
Lsi06g01495 1599 SUPERFAMILY Cysteine proteinases 1266 1596 IPR038765 -
Lsi06g01495 1599 MobiDBLite consensus disorder prediction 941 982 - -
Lsi06g01495 1599 Pfam Ubiquitin carboxyl-terminal hydrolase 1267 1574 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01433 Lsi-Chr6:24864910 Lsi06g01495 Lsi-Chr6:25404929 8.21E-47 dispersed
Lsi06g01495 Lsi-Chr6:25404929 Lsi11g00675 Lsi-Chr11:7112378 1.84E-06 dispersed
Lsi06g01492 Lsi-Chr6:25393824 Lsi06g01495 Lsi-Chr6:25404929 1.34E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01495 - - mcha:111007268 2616.26