Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01496 ATGGACGGCGCTGCCGCCGACTCTTCTGATTGCTCCTCCCTCGCAAAATTCGATCATGAATCGCCGTCGACGCCGCCGGAAGCGGCGGAGGACTATTACTACTACTCTGATTCCGGACTCTCTGGTGTTCCGCTGACGGAGGCTCCAATTCTCCTGCTTATTAAATTTCACAGAGCATTGCGATCGGAGCTCGCGGATTTACGGCGCGTGACGTTGGCGGCGGCGGAGAGTGGCTGTTACGGAGGCGAGTTTGTGTCGGGATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCTGCCGAGGATGAGGTTTTTCCATTGCTGATGAAGGAATTCTCTACAAAAGAACAAGCGTCCCTTGTGTGGCAATTCATTTGCAGTGTACCAATGATACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCAGAGCAGCAATCAGAAGTTGTAAACTGCCTAAGAGATGTAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAGCACTGAGAAACCTTCTAGAGATATAGAAGCAGAAGATAGAAAGTTGCATTTATCTCAGGACAGTGGACAGAACCCTGTTGATAGCCTCCATCTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTACTGAAATGCCTATTTCAAGTCAAGAGTTGCACTTCAACAGCTATTTCTAACCTTGATTCCTTACTTGTCCAAATAAAGTTCTTGGCTGATGTAATTCTTTTTTACCGAAAGGCATCAGAGAAATTCTTTCGTCCCGTATTCAATCGACATTCCGACGTCTGCGTAATCGCCTCTGACCAATCGTTTCTTAGTGATGGTCATATTGAAGGTTTACAGCAGTTGCTGCAGCATGGTGCCCAAGATACTATACCTTTGAGCAATTTCTTGGAAAAATTATGCTGGGACATGGAGTCATTTGTCGTACGAGTCAGCAAACAATTCACTTTTCAAGAAACAAAGGTGCTTCCAGTGATTAGAACGAGCTGCAGCCATAAAGCACAGCAACAACTCTTGTATATGAGCCTCCGTACCTTGCCACTTGGGCTCTTGAAGTGTATTATTACTTGGTTTTCAGCTCACTTATCTGAGGAAGAATGGAGATCTGTACTGCACACCAAATCACAGGGAGATTTTCGGGTTAACAATGCACTTGTCGCCCTCTTGCATGATTGGTTTCGAATTGGCTACTCAGGAAAAATCTCGGTTGAACAATTTGGACAAGATTTGCAGAAAGTTTTCAAGACCAGAAGCTATTTTTTGGATAAACAGGTGGAACAAATGAAAGAAGTTGCTGAAACTTCCTCCTTGAGCTCAAATGCTCAATCTTATAAGAGGTCAAACTCTGAGGAAATTGGATTACTTTCTACCAACAAGGATAAGAGCTTCTTGTCAAATTCTTCACCAAGTGTTTCTTGCACTTCTTCAGTGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAAATACATTTTCCAGGAACCATGAAGGTACCGTGTCCGTATACTAAACATCTTTACGAAGAACGGCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCAGCTAAACTGGTTGAACATGTTGGGATTTTGACAGAGTTTCGAAGGCGGTTCCAATTGGTGAAATTTTTATATCAGATCCATACAGATGCTGAGGACCAGATTGCTTTTCCAGCTTTGGAGAAGAAGGGAAAGTTCCAAAACATTAGCTACTCCTACACTATTGATCATAAACTGGAAGTACACCAATTCAGTAAAATTTCCTTCATTCTTAATGAAATGTCTGAATTGCACTCTTCACTTTTTTATGTCAATGCTGATAGGAAAATGTTTAGTCACCGACAGCTCTGTTTGGAACTCCATGATTTGTGCAAATCTTTGCACAAGTCACTCTCTGACCACGTTGATCGCGAAGAAATTGAACTTTGGCCCTTGTTCAGAGAATTCTTCTCAATCGACGAACAAGAAACGCTTATTGGAGCAATATTTGGTAGAACAAAAGCCGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGAAATACCATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGAGCATGAGAAGGTGGCACCTGAGGTGAAAACTATCACTCCCTCATTGGCTTCAGATCCTTTGGAAATCATCTCAAAATATCTATCCAAGGAAGTAACTGATCAATGTGAAGGAAATCTTTTTGGAAAAACCATCATCTCAACTCAGAAGGAACATCAATGTCATGTTACCGATGCCGACAAGTCAGAAATGTTCAATTTGAGTGATGAAACAAAAGATTTTGATGGCAGCCAACATAACGAAACATTTGAAGAATCGACAAAACCTGTTTCTCATGGGGTTGTTGATAGGGATGCTGATGGTACCGCAGAACATGTGACCGGAACGGAACGAGCTGAAGAAGGTAAGAAATCAAGCCAACATGATCACCTTCTTACAATTAGTCAAGAAGATCTGGAGGTTGTAATAAGAAGGGTATCAAGAGACGCATCCTTAGACTCCAAAAGTAAATCCCACTTGATACAGAATTTGCTAATGAGCCGTTGGATTGCAAAAAACCATTCCCAATTAGAGACAAACATTATATCAGAAAGCCAAGGATTTGCAGGTCAGTATCCATCTTATAGGGATTCCTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTATATACATGCATACATTGTCATGACGAGGCTACCGATCACTCATTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCCATTAGCAAGACATGTTCAACTCTCTCTTGTGGTAATTTGTCCATGGGAAAATACTTCTGCAAGATCTGCAAACTATTTGACGATTCAAGAGATATCTACCATTGTCCATACTGTAACCTATGCCGAGTCGGGAAGGGATTGGGCATTGATTACTTCCATTGCATGAACTGCAATGCCTGTATGTCTCGTGCACTCTCAGTTCATGTATGTAGAGAGAAATGCCTTGAAGACAACTGCCCTATTTGCCATGAATACATTTTCACTTCCACCCTTCCAGTCAAGTCCCTTCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACTCATTATACCTGCCCTATCTGTAGCAAGTCGCTCGGAGATATGCAGGTGTACTTTGAGATGTTGGATGCATTATTGGCTGAAGAGAAAATTCCAGAAGAGTATTCTAGGAAAACTCAGGTCATATTGTGTAATGACTGCGAGAAGCGTGGAACAGCACCATTCCACTGGCTGTACCATAAATGTTCATGGTGTGGTTCATATAATACTAGGGTTTTGTAA 3555 41.66 MDGAAADSSDCSSLAKFDHESPSTPPEAAEDYYYYSDSGLSGVPLTEAPILLLIKFHRALRSELADLRRVTLAAAESGCYGGEFVSGLIRRVEFLKLAYKYHCAAEDEVFPLLMKEFSTKEQASLVWQFICSVPMILLEELLPWMMSFLPSEQQSEVVNCLRDVVPNEKLLQEVIMSWLGSTEKPSRDIEAEDRKLHLSQDSGQNPVDSLHLWHGAIMKDLKEVLKCLFQVKSCTSTAISNLDSLLVQIKFLADVILFYRKASEKFFRPVFNRHSDVCVIASDQSFLSDGHIEGLQQLLQHGAQDTIPLSNFLEKLCWDMESFVVRVSKQFTFQETKVLPVIRTSCSHKAQQQLLYMSLRTLPLGLLKCIITWFSAHLSEEEWRSVLHTKSQGDFRVNNALVALLHDWFRIGYSGKISVEQFGQDLQKVFKTRSYFLDKQVEQMKEVAETSSLSSNAQSYKRSNSEEIGLLSTNKDKSFLSNSSPSVSCTSSVYGTSYSSGINLQIHFPGTMKVPCPYTKHLYEERPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILTEFRRRFQLVKFLYQIHTDAEDQIAFPALEKKGKFQNISYSYTIDHKLEVHQFSKISFILNEMSELHSSLFYVNADRKMFSHRQLCLELHDLCKSLHKSLSDHVDREEIELWPLFREFFSIDEQETLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYEHEKVAPEVKTITPSLASDPLEIISKYLSKEVTDQCEGNLFGKTIISTQKEHQCHVTDADKSEMFNLSDETKDFDGSQHNETFEESTKPVSHGVVDRDADGTAEHVTGTERAEEGKKSSQHDHLLTISQEDLEVVIRRVSRDASLDSKSKSHLIQNLLMSRWIAKNHSQLETNIISESQGFAGQYPSYRDSLKKEFGCKHYKRNCKLLAPCCNQLYTCIHCHDEATDHSLDRKSITKMMCMNCLVVQPISKTCSTLSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPEEYSRKTQVILCNDCEKRGTAPFHWLYHKCSWCGSYNTRVL 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25414014 25422147 - Lsi06G014960.1 Lsi06g01496 666226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01496 1184 MobiDBLite consensus disorder prediction 820 873 - -
Lsi06g01496 1184 Gene3D nmb1532 protein domain like 43 129 - -
Lsi06g01496 1184 SUPERFAMILY Zinc hairpin stack 1015 1069 IPR037275 -
Lsi06g01496 1184 Pfam Zinc-ribbon 1125 1182 IPR039512 -
Lsi06g01496 1184 CDD RING-H2_Pirh2 1077 1120 - -
Lsi06g01496 1184 SMART ring_2 1078 1119 IPR001841 -
Lsi06g01496 1184 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 40 109 - -
Lsi06g01496 1184 SUPERFAMILY RING/U-box 1065 1124 - -
Lsi06g01496 1184 ProSiteProfiles Zinc finger CHY-type profile. 942 1011 IPR008913 GO:0008270
Lsi06g01496 1184 Pfam Ring finger domain 1076 1119 IPR001841 -
Lsi06g01496 1184 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 109 1184 - -
Lsi06g01496 1184 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 40 109 - -
Lsi06g01496 1184 ProSiteProfiles Zinc finger RING-type profile. 1078 1120 IPR001841 -
Lsi06g01496 1184 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 109 1184 - -
Lsi06g01496 1184 SUPERFAMILY CHY zinc finger-like 940 1005 IPR037274 GO:0008270
Lsi06g01496 1184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1071 1122 IPR013083 -
Lsi06g01496 1184 Gene3D - 1148 1184 - -
Lsi06g01496 1184 Gene3D nmb1532 protein domain like 531 702 - -
Lsi06g01496 1184 MobiDBLite consensus disorder prediction 1 26 - -
Lsi06g01496 1184 ProSiteProfiles Zinc finger CTCHY-type profile. 1014 1077 IPR017921 -
Lsi06g01496 1184 CDD Hr-like 538 681 - -
Lsi06g01496 1184 Pfam CHY zinc finger 949 1024 IPR008913 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01496 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 2018.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01293 Lsi-Chr1:11222113 Lsi06g01496 Lsi-Chr6:25414014 2.08E-55 dispersed
Lsi05g01510 Lsi-Chr5:22884295 Lsi06g01496 Lsi-Chr6:25414014 7.08E-45 dispersed
Lsi06g01320 Lsi-Chr6:23789810 Lsi06g01496 Lsi-Chr6:25414014 2.84E-06 dispersed
Lsi06g01496 Lsi-Chr6:25414014 Lsi10g01225 Lsi-Chr10:16526441 1.41E-10 dispersed
Lsi06g01496 Lsi-Chr6:25414014 Lsi04g00238 Lsi-Chr4:2412687 1.91E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01496 Lsi_Chr06 FPKM 0.544876 0.543854 0.0 0.123308 1.229964 1.265693 1.392511 0.0 0.0 0.0
Lsi06g01496 Lsi_Chr00 FPKM 0.544876 0.543854 0.0 0.123308 1.229964 1.265693 1.392511 0.0 0.0 0.0