Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01497 ATGGAAGTTTCTGGGTTTATGCCCAACAAATGGATTGCAACCGCCCTTGGAATTTGGATTCAATGCATCTGCGGTGCTTCCTACACCTTCAGCATCTATTCTTCCGCCCTCAAGTCCACGCAGGCCTACGATCAATCCACCCTCGACACCGTTTCCGTTTTCAAAGACATTGGCGCCAACGCCGGCATAATTTCTGGTTTTCTTTACTCTGCCGTTGCTCCCCCCAATCCCCGCCGTGCTTTTGCCGGGCCATGGGTGGTTCACGCCGCGGGAGCGATTCAGTGCTTCCTCGGATATATTTTCATTTGGGCCGCTGTCTCTGGAGTGATAGATCGGCCGCCGGTGCCGGCGATGTGCTTCTTCATGTTTCTGGCTGCACATGCGCAAACGTTTTTCAACACGGCGAATGTGGTGACTGGCGTGCACAATTTTGCGCACTACAGCGGGACGATTGTGGGAATCATGAAGGGATATCTTGGTCTCAGTGGAGCACTGCTAATCCAAGTTTATAATACGACTTGCAATGGAGATCCAAGCAATTTTCTCCTCATGCTGGCGGTTTTGCCCACACTTCTTTCCATCATGTTCATGTGGTTTGTTAGAATTGACAAAACAGAGTCTAGTAATGAGATGAAGCATTTGAACTCATTGTCTGCACTTGCTGTGATAGTTGCTTTTTACCTAATGGTTGTCATCATCTTGAACAACACTTTCACCCTTTCATCATGGACTCGTTTCTTCACATTCTCCATACTCTTGATTCTCCTTGCTGCTCCTCTTGGAATCGCCCTTAATGCTCAGAGGGAGGACTTTAGAGAGTCATCTCCATCATTGTTCACTGAAAAAAGTCATGTTGTTAACAAACCCAAGTCAGTGGATGCAGAGGATTCGGTTGAATATCATGAGTTGCCCGGGGATGAGAGCCAGATAGTGGCTGTTTCGAACTCTAGAATCCCTCAAGCCATGAATGTCTTGGAAGCTATACGCACTATAAACTTCTGGCTGTTGTTTCTTGCCATGGTGTGTGGAATGGGTTCTGGATTAGCCACAATAAACAACATGAGCCAACTTGGCCAGTCTCTTGGTTACACAGCAACAGAAACAAAGACATTTGTTTCATTATGGAGTATATGGAACTTTCTTGGACGTTTTGGAGCCGGTTACACCTCTGATTTTCTTCTCCACTCATATGGCTGGGCGAGGCCATTGTTAATGGCGATTACTCTACTGATAATGAGTGGCGGCCACATCGTGATTGCCTCTGGTTTCTCTGGAAATCTGTATGTGGGTTCAATTCTTGTTGGCATATGCTACGGCTCACAGTGGTCATTGATGCCCACAATCACTTCAGAGATATTTGGTTTAGAGCATATGGGTACTATTTTCAACACCATAGCCATAGCCAGCCCTTTGGGGTCTTACATTTTTTCTGTTAGAGTTATCGGATACATTTACGACAGAGAGGCTGCCGGAGAACATGGCTCGTGCTCCGGCACACACTGTTTTGTGGTATCTTTTCTTGTCATGGCCGTCGTGGCTTTCTTGGGATTTCTTGTTGCTGCTGCTCTCTTCTTTCGAACCAGGAGATTTTACCGGCTGGCTTTGCAAAGAAGAGTTGAATGTCTCAGTTAA 1632 46.57 MEVSGFMPNKWIATALGIWIQCICGASYTFSIYSSALKSTQAYDQSTLDTVSVFKDIGANAGIISGFLYSAVAPPNPRRAFAGPWVVHAAGAIQCFLGYIFIWAAVSGVIDRPPVPAMCFFMFLAAHAQTFFNTANVVTGVHNFAHYSGTIVGIMKGYLGLSGALLIQVYNTTCNGDPSNFLLMLAVLPTLLSIMFMWFVRIDKTESSNEMKHLNSLSALAVIVAFYLMVVIILNNTFTLSSWTRFFTFSILLILLAAPLGIALNAQREDFRESSPSLFTEKSHVVNKPKSVDAEDSVEYHELPGDESQIVAVSNSRIPQAMNVLEAIRTINFWLLFLAMVCGMGSGLATINNMSQLGQSLGYTATETKTFVSLWSIWNFLGRFGAGYTSDFLLHSYGWARPLLMAITLLIMSGGHIVIASGFSGNLYVGSILVGICYGSQWSLMPTITSEIFGLEHMGTIFNTIAIASPLGSYIFSVRVIGYIYDREAAGEHGSCSGTHCFVVSFLVMAVVAFLGFLVAAALFFRTRRFYRLALQRRVECLS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25432208 25435438 + Lsi06G014970.1 Lsi06g01497 666227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01497 543 SUPERFAMILY MFS general substrate transporter 216 529 IPR036259 -
Lsi06g01497 543 Pfam Nodulin-like 10 263 IPR010658 -
Lsi06g01497 543 CDD MFS_Mch1p_like 10 516 - -
Lsi06g01497 543 Pfam Major Facilitator Superfamily 335 528 IPR011701 GO:0022857|GO:0055085
Lsi06g01497 543 Gene3D MFS general substrate transporter like domains 213 525 IPR036259 -
Lsi06g01497 543 PANTHER F25A4.25 PROTEIN 9 540 - -
Lsi06g01497 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01497 Lsi-Chr6:25432208 Lsi04g00096 Lsi-Chr4:1102253 5.12E-106 dispersed
Lsi06g01497 Lsi-Chr6:25432208 Lsi06g01498 Lsi-Chr6:25437256 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01497 - - csv:101216789 970.304