Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01498 ATGGAATTGAAATCGGAGACTTCCAGCTTAAACAACAAATGGGTATCAACAGTTGCTAGCGTATGGATTCAATGCACCAGTGGATCTCTTTACACCTTCTCCATCTATTCCCAAACCCTCAAGTCAACTCAGGGATACGATCAATCCACTTTGGATATTGTTTCTGTTTTCAAAGACATCGGTGTCAATTGTGGCGTCCTTGCGGGCTTTCTCTACTACTATGCCACAGCTGATGTTGGTCGTCCTGGGCCGTGGATTGTTCACTTGGCCGGTGCAATTCAGTGCTTCTTGGGTTACTTCCTTATCTGGGCTGCCGTTTCTGGGGTCTTTCCTCGGCCGCCGGTTCCCGTTATGTGCCTTTTCATGTTGGTGACTGCGCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTTACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATATGAGACAATATTTAATGGACAACCTACTTCGTTTCTTCTGATGCTGGCGCTACTACCAACCCTTAATTCCTTATTGTGTATGTGGTTCGTGAGAATCCACCATGCAGATGATGGGATTGAAAAAGAGCATCTGAATACCCTATCCATAATTACTCTGCTCGTTGCTACTTACCTTATGATCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCGTTACATGTTGCTACATTTGTTCTACTTTTGATGTTGCTTGCATCTCCACTATATATTGCAATTAGAGCCCAACAGAGAGATTCCAGAAGGATTTTGCACCCTTCTTTCACTGAGAGTGACCGGCTGATTGATCGCTCCAATCAAGAGACTTTGGATTTTGACTATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTATGCACAATAGACTTCTGGATATTGTTTTTTGCTACTGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTTGGTTACACAAGCTTGGAGATAAATTCTTTGGTTTCCTTGTGGAGCATTTGGAATTTTTTTGGTCGTTTTGGAGCTGGGTATGTGTCGGATTATTTTCTGCATGCCAAAGGATGGGCTAGGCCATTGTTCATGTTCATCACTCTGACAACCATGAGCATTGGACATGTAGTGATTGCCTCTGGCCTGCCTGGTGCTCTTTTTGCCGGTTCGGTCGTAGTGGGTGTTTGTTATGGTTCTCAGTGGTCACTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCTGTAACAGTAGCAAGCCCTGTTGGATCTTATTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAGGAAGCATCTGGTGAAGGAGATACTTGTACTGGAACTTACTGCTTCATGTTATCATTTCTGATTATGGCTTTTGCCACTCTCTTGGGCTCTTTAGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTCTATGATCAAGTTGTTATCAGAAGGCTGCAACACTCATCAAATGGATAA 1596 42.73 MELKSETSSLNNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYATADVGRPGPWIVHLAGAIQCFLGYFLIWAAVSGVFPRPPVPVMCLFMLVTAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNGQPTSFLLMLALLPTLNSLLCMWFVRIHHADDGIEKEHLNTLSIITLLVATYLMIKIVLEHIFTFQFPLHVATFVLLLMLLASPLYIAIRAQQRDSRRILHPSFTESDRLIDRSNQETLDFDYERRRESEESLNLFQALCTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINSLVSLWSIWNFFGRFGAGYVSDYFLHAKGWARPLFMFITLTTMSIGHVVIASGLPGALFAGSVVVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAVTVASPVGSYLFSVRVVGYIYDKEASGEGDTCTGTYCFMLSFLIMAFATLLGSLAALGLFFWRRSFYDQVVIRRLQHSSNG 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25437256 25444111 + Lsi06G014980.1 Lsi06g01498 666228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01498 531 SUPERFAMILY MFS general substrate transporter 219 514 IPR036259 -
Lsi06g01498 531 CDD MFS_Mch1p_like 13 498 - -
Lsi06g01498 531 Pfam Nodulin-like 13 264 IPR010658 -
Lsi06g01498 531 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 8 528 - -
Lsi06g01498 531 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 528 - -
Lsi06g01498 531 Pfam Major Facilitator Superfamily 322 514 IPR011701 GO:0022857|GO:0055085
Lsi06g01498 531 SUPERFAMILY MFS general substrate transporter 12 203 IPR036259 -
Lsi06g01498 531 Gene3D MFS general substrate transporter like domains 214 509 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01498 Lsi-Chr6:25437256 Lsi03g01994 Lsi-Chr3:31328766 6.87E-105 dispersed
Lsi06g01497 Lsi-Chr6:25432208 Lsi06g01498 Lsi-Chr6:25437256 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01498 - - csv:101216552 982.245