Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01498 ATGGAATTGAAATCGGAGACTTCCAGCTTAAACAACAAATGGGTATCAACAGTTGCTAGCGTATGGATTCAATGCACCAGTGGATCTCTTTACACCTTCTCCATCTATTCCCAAACCCTCAAGTCAACTCAGGGATACGATCAATCCACTTTGGATATTGTTTCTGTTTTCAAAGACATCGGTGTCAATTGTGGCGTCCTTGCGGGCTTTCTCTACTACTATGCCACAGCTGATGTTGGTCGTCCTGGGCCGTGGATTGTTCACTTGGCCGGTGCAATTCAGTGCTTCTTGGGTTACTTCCTTATCTGGGCTGCCGTTTCTGGGGTCTTTCCTCGGCCGCCGGTTCCCGTTATGTGCCTTTTCATGTTGGTGACTGCGCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTTACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATATGAGACAATATTTAATGGACAACCTACTTCGTTTCTTCTGATGCTGGCGCTACTACCAACCCTTAATTCCTTATTGTGTATGTGGTTCGTGAGAATCCACCATGCAGATGATGGGATTGAAAAAGAGCATCTGAATACCCTATCCATAATTACTCTGCTCGTTGCTACTTACCTTATGATCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCGTTACATGTTGCTACATTTGTTCTACTTTTGATGTTGCTTGCATCTCCACTATATATTGCAATTAGAGCCCAACAGAGAGATTCCAGAAGGATTTTGCACCCTTCTTTCACTGAGAGTGACCGGCTGATTGATCGCTCCAATCAAGAGACTTTGGATTTTGACTATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTATGCACAATAGACTTCTGGATATTGTTTTTTGCTACTGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTTGGTTACACAAGCTTGGAGATAAATTCTTTGGTTTCCTTGTGGAGCATTTGGAATTTTTTTGGTCGTTTTGGAGCTGGGTATGTGTCGGATTATTTTCTGCATGCCAAAGGATGGGCTAGGCCATTGTTCATGTTCATCACTCTGACAACCATGAGCATTGGACATGTAGTGATTGCCTCTGGCCTGCCTGGTGCTCTTTTTGCCGGTTCGGTCGTAGTGGGTGTTTGTTATGGTTCTCAGTGGTCACTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCTGTAACAGTAGCAAGCCCTGTTGGATCTTATTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAGGAAGCATCTGGTGAAGGAGATACTTGTACTGGAACTTACTGCTTCATGTTATCATTTCTGATTATGGCTTTTGCCACTCTCTTGGGCTCTTTAGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTCTATGATCAAGTTGTTATCAGAAGGCTGCAACACTCATCAAATGGATAA 1596 42.73 MELKSETSSLNNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYATADVGRPGPWIVHLAGAIQCFLGYFLIWAAVSGVFPRPPVPVMCLFMLVTAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNGQPTSFLLMLALLPTLNSLLCMWFVRIHHADDGIEKEHLNTLSIITLLVATYLMIKIVLEHIFTFQFPLHVATFVLLLMLLASPLYIAIRAQQRDSRRILHPSFTESDRLIDRSNQETLDFDYERRRESEESLNLFQALCTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINSLVSLWSIWNFFGRFGAGYVSDYFLHAKGWARPLFMFITLTTMSIGHVVIASGLPGALFAGSVVVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAVTVASPVGSYLFSVRVVGYIYDKEASGEGDTCTGTYCFMLSFLIMAFATLLGSLAALGLFFWRRSFYDQVVIRRLQHSSNG 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25437256 25444111 + Lsi06G014980.1 Lsi06g01498 666228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01498 531 SUPERFAMILY MFS general substrate transporter 219 514 IPR036259 -
Lsi06g01498 531 CDD MFS_Mch1p_like 13 498 - -
Lsi06g01498 531 Pfam Nodulin-like 13 264 IPR010658 -
Lsi06g01498 531 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 8 528 - -
Lsi06g01498 531 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 528 - -
Lsi06g01498 531 Pfam Major Facilitator Superfamily 322 514 IPR011701 GO:0022857|GO:0055085
Lsi06g01498 531 SUPERFAMILY MFS general substrate transporter 12 203 IPR036259 -
Lsi06g01498 531 Gene3D MFS general substrate transporter like domains 214 509 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01498 - - - csv:101216552 982.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01498 Lsi-Chr6:25437256 Lsi03g01994 Lsi-Chr3:31328766 6.87E-105 dispersed
Lsi06g01497 Lsi-Chr6:25432208 Lsi06g01498 Lsi-Chr6:25437256 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g481 . . . . . . . Bma12g01012 . . . Cma11g00169 . . . . Cpe04g01522 Bhi02g00365 Tan09g2174 Cmetu02g0192 . Hepe09g0147 . . Cla06g01618 Cam06g1797 Cec06g1847 Cco06g1854 Clacu06g1757 Cmu06g1701 Cre06g2519 . . . . . . . . . . . . Bpe07g00801 . . . . . Cmo11g00139 . . . . . Cpe18g00811 . . . . . . . Cla04g01216 . . . . . . Lsi06g01498 Csa01g00202 Chy02g02529 Cme02g01914
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g00780 . 1 725 Nodulin-like Gene Family AT4G19180 58.7 5.3e-241 830.9
Lsi04g01840 . 24 306 Nodulin-like Gene Family AT3G45870 65.0 8.7e-96 347.1
Lsi02g01544 . 12 371 Nodulin-like Gene Family AT3G28050 58.8 3.8e-115 411.8
Lsi07g01289 . 2 360 Nodulin-like Gene Family AT5G47470 56.9 5.6e-101 364.8
Lsi03g01416 . 4 364 Nodulin-like Gene Family AT5G40230 50.7 3.2e-93 339.0
Lsi02g01544 . 10 333 Nodulin-like Gene Family AT5G40230 54.9 9.2e-93 337.4
Lsi03g01416 . 6 364 Nodulin-like Gene Family AT5G40240 50.7 3.8e-91 332.0
Lsi02g01544 . 3 333 Nodulin-like Gene Family AT5G40240 52.6 6.5e-91 331.3
Lsi08g01356 CCT,ECH 66 332 Nodulin-like Gene Family AT3G53210 56.6 2.7e-83 305.4
Lsi01g01401 . 99 364 Nodulin-like Gene Family AT2G37450 59.0 1.9e-84 309.3
Lsi04g00873 . 98 331 Nodulin-like Gene Family AT2G37450 57.7 2.1e-70 262.7
Lsi04g02384 . 83 317 Nodulin-like Gene Family AT2G37450 53.0 8.3e-64 240.7
Lsi01g01401 . 12 364 Nodulin-like Gene Family AT2G37460 65.5 2.5e-125 445.7
Lsi04g00873 . 11 331 Nodulin-like Gene Family AT2G37460 57.6 5.2e-99 358.2
Lsi02g01668 . 8 330 Nodulin-like Gene Family AT2G37460 52.3 4.0e-91 332.0
Lsi08g01356 CCT,ECH 54 444 Nodulin-like Gene Family AT1G75500 72.2 6.3e-161 563.9
Lsi04g01711 CCT,ECH 1 350 Nodulin-like Gene Family AT1G75500 64.6 3.1e-131 465.3
Lsi04g00524 . 12 318 Nodulin-like Gene Family AT1G60050 52.3 5.3e-88 321.6
Lsi01g01401 . 12 332 Nodulin-like Gene Family AT5G13670 53.1 2.3e-91 332.8
Lsi04g00873 . 12 340 Nodulin-like Gene Family AT2G39510 61.7 2.3e-112 402.5
Lsi01g01401 . 13 341 Nodulin-like Gene Family AT2G39510 60.2 1.2e-111 400.2
Lsi02g01668 . 8 331 Nodulin-like Gene Family AT2G39510 57.2 5.4e-109 391.3
Lsi04g02384 . 18 334 Nodulin-like Gene Family AT2G39510 50.4 1.5e-87 320.1
Lsi04g00874 CCT,ECH 8 297 Nodulin-like Gene Family AT2G39510 51.8 2.0e-87 319.7
Lsi02g01665 CCT,ECH 32 315 Nodulin-like Gene Family AT2G39510 52.3 2.5e-82 302.8
Lsi02g01666 . 1 242 Nodulin-like Gene Family AT2G39510 50.4 1.6e-65 246.9
Lsi08g00420 . 19 242 Nodulin-like Gene Family AT4G08290 56.7 1.3e-67 253.4
Lsi02g01665 CCT,ECH 22 203 Nodulin-like Gene Family AT4G08290 52.2 3.5e-44 175.6
Lsi04g02384 . 12 335 Nodulin-like Gene Family AT4G08300 61.6 1.4e-112 403.3
Lsi10g00701 . 33 286 Nodulin-like Gene Family AT5G64700 61.2 3.1e-79 292.0
Lsi10g00702 CCT 4 209 Nodulin-like Gene Family AT5G64700 55.4 3.1e-50 195.7
Lsi03g01630 . 10 332 Nodulin-like Gene Family AT5G07050 65.3 1.2e-119 426.8
Lsi03g01629 . 10 370 Nodulin-like Gene Family AT5G07050 60.8 1.8e-118 422.9
Lsi01g01762 . 10 273 Nodulin-like Gene Family AT5G07050 55.3 2.5e-96 349.4
Lsi02g01668 . 8 330 Nodulin-like Gene Family AT5G07050 50.2 3.4e-85 312.4
Lsi01g01762 . 13 291 Nodulin-like Gene Family AT3G56620 53.0 2.4e-88 322.8
Lsi04g00524 . 13 349 Nodulin-like Gene Family AT1G70260 51.2 7.1e-93 337.8
Lsi11g00654 . 5 311 Nodulin-like Gene Family AT1G09380 53.0 2.0e-95 346.3
Lsi03g01629 . 12 363 Nodulin-like Gene Family AT2G40900 52.6 3.3e-101 365.5
Lsi03g01630 . 12 337 Nodulin-like Gene Family AT2G40900 54.2 1.8e-99 359.8
Lsi01g01762 . 13 286 Nodulin-like Gene Family AT2G40900 54.2 1.3e-89 327.0
Lsi08g01356 CCT,ECH 66 410 Nodulin-like Gene Family AT3G18200 57.1 1.4e-107 386.7
Lsi06g01306 . 23 287 Nodulin-like Gene Family AT3G18200 51.5 1.4e-80 297.0
Lsi04g02384 . 12 335 Nodulin-like Gene Family AT1G44800 60.1 2.7e-113 405.6
Lsi04g01840 . 108 400 Nodulin-like Gene Family AT5G45370 63.6 2.9e-99 358.6
Lsi04g02384 . 12 294 Nodulin-like Gene Family AT1G21890 60.6 2.7e-102 369.0
Lsi03g01630 . 15 308 Nodulin-like Gene Family AT1G21890 51.3 3.4e-81 298.9
Lsi01g01401 . 11 313 Nodulin-like Gene Family AT1G21890 50.3 7.6e-81 297.7
Lsi07g00429 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Lsi07g00763 . 3 417 Nodulin-like Gene Family AT4G19450 67.7 5.4e-150 527.7
Lsi09g01880 . 44 442 Nodulin-like Gene Family AT4G19450 58.0 2.3e-129 459.1
Lsi06g01497 . 7 538 Nodulin-like Gene Family AT1G74780 60.1 1.8e-182 636.0
Lsi06g01498 . 10 527 Nodulin-like Gene Family AT1G74780 58.0 6.4e-172 600.9
Lsi10g00482 CCT 9 540 Nodulin-like Gene Family AT4G34950 70.4 3.6e-221 764.6
Lsi03g00402 . 6 641 Nodulin-like Gene Family AT5G14120 63.6 1.8e-228 788.9
Lsi10g00482 CCT 1 386 Nodulin-like Gene Family AT2G16660 68.8 3.3e-149 525.0
Lsi11g01194 CCT 1 302 Nodulin-like Gene Family AT2G16660 61.8 1.1e-104 377.1
Lsi04g00096 . 14 563 Nodulin-like Gene Family AT2G39210 70.9 1.0e-226 783.1
Lsi04g00097 CCT,ECH 15 572 Nodulin-like Gene Family AT2G39210 67.6 2.1e-219 758.8
Lsi08g00691 CCT,ECH 31 613 Nodulin-like Gene Family AT2G39210 61.7 3.9e-210 728.0
Lsi04g00100 . 3 566 Nodulin-like Gene Family AT2G39210 63.0 2.2e-200 695.7
Lsi03g01994 . 1 555 Nodulin-like Gene Family AT2G39210 61.7 5.1e-194 674.5
Lsi03g00141 . 20 569 Nodulin-like Gene Family AT2G39210 59.6 4.7e-187 651.4
Lsi04g00099 . 3 489 Nodulin-like Gene Family AT2G39210 59.8 7.0e-183 637.5
Lsi03g01999 . 1 577 Nodulin-like Gene Family AT2G39210 56.5 1.0e-181 633.6
Lsi01g01296 . 18 535 Nodulin-like Gene Family AT2G39210 56.2 1.6e-166 583.2
Lsi02g01455 . 16 503 Nodulin-like Gene Family AT2G39210 52.7 5.4e-143 505.0
Lsi01g02076 . 28 259 Nodulin-like Gene Family AT2G39210 60.3 3.7e-75 279.6
Lsi01g02077 . 12 197 Nodulin-like Gene Family AT2G39210 60.3 3.0e-61 233.4
Lsi04g00098 . 14 138 Nodulin-like Gene Family AT2G39210 72.8 1.6e-49 194.5
Lsi07g00763 . 7 565 Nodulin-like Gene Family AT3G01630 52.1 1.1e-148 523.9
Lsi09g01880 . 50 589 Nodulin-like Gene Family AT3G01630 51.1 4.8e-141 498.4
Lsi03g00402 . 6 477 Nodulin-like Gene Family AT3G01930 61.8 5.4e-161 564.3
Lsi06g01497 . 10 537 Nodulin-like Gene Family AT1G18940 55.6 4.2e-168 588.2
Lsi06g01498 . 7 520 Nodulin-like Gene Family AT1G18940 54.3 4.7e-159 558.1
Lsi06g01497 . 6 539 Nodulin-like Gene Family AT2G34350 56.5 4.5e-162 568.2
Lsi06g01498 . 11 525 Nodulin-like Gene Family AT2G34350 54.5 2.7e-154 542.3
Lsi03g00141 . 15 578 Nodulin-like Gene Family AT2G28120 69.0 2.6e-219 758.4
Lsi04g00096 . 9 568 Nodulin-like Gene Family AT2G28120 62.0 4.0e-196 681.4
Lsi04g00097 CCT,ECH 9 571 Nodulin-like Gene Family AT2G28120 58.8 3.0e-191 665.2
Lsi08g00691 CCT,ECH 29 596 Nodulin-like Gene Family AT2G28120 58.8 3.5e-184 641.7
Lsi03g01994 . 19 563 Nodulin-like Gene Family AT2G28120 59.5 5.3e-180 627.9
Lsi04g00100 . 1 570 Nodulin-like Gene Family AT2G28120 55.9 7.4e-174 607.4
Lsi03g01999 . 19 563 Nodulin-like Gene Family AT2G28120 57.0 1.3e-173 606.7
Lsi02g01455 . 13 517 Nodulin-like Gene Family AT2G28120 57.0 1.5e-163 573.2
Lsi03g00144 . 1 551 Nodulin-like Gene Family AT2G28120 53.8 8.5e-162 567.4
Lsi04g00099 . 1 488 Nodulin-like Gene Family AT2G28120 52.6 7.4e-158 554.3
Lsi01g01296 . 16 535 Nodulin-like Gene Family AT2G28120 55.0 2.6e-155 545.8
Lsi03g00143 . 1 565 Nodulin-like Gene Family AT2G28120 51.5 2.1e-152 536.2
Lsi03g00142 . 4 538 Nodulin-like Gene Family AT2G28120 51.2 5.9e-147 518.1
Lsi01g02076 . 28 261 Nodulin-like Gene Family AT2G28120 58.5 3.9e-74 276.2
Lsi01g02077 . 1 196 Nodulin-like Gene Family AT2G28120 55.3 3.3e-57 219.9
Lsi04g00098 . 14 138 Nodulin-like Gene Family AT2G28120 68.8 1.0e-45 181.8
Lsi07g00763 . 4 570 Nodulin-like Gene Family AT1G31470 56.9 1.8e-167 586.3
Lsi09g01880 . 50 596 Nodulin-like Gene Family AT1G31470 55.9 3.3e-161 565.5
Lsi08g00551 . 17 217 Nodulin-like Gene Family AT1G76800 68.7 2.4e-68 255.4
Lsi03g00875 . 10 202 Nodulin-like Gene Family AT1G76800 62.7 9.3e-60 226.9
Lsi02g02019 . 35 197 Nodulin-like Gene Family AT1G76800 76.7 1.2e-59 226.5
Lsi03g00875 . 14 202 Nodulin-like Gene Family AT3G25190 68.6 2.4e-64 242.3
Lsi08g00551 . 23 217 Nodulin-like Gene Family AT3G25190 62.6 3.9e-59 224.9
Lsi02g02019 . 42 197 Nodulin-like Gene Family AT3G25190 63.2 1.2e-47 186.8
Lsi08g00551 . 20 217 Nodulin-like Gene Family AT1G21140 73.7 7.5e-73 270.4
Lsi03g00875 . 7 202 Nodulin-like Gene Family AT1G21140 62.8 2.8e-64 241.9
Lsi02g02019 . 25 203 Nodulin-like Gene Family AT1G21140 69.3 5.5e-60 227.6
Lsi08g00551 . 20 214 Nodulin-like Gene Family AT3G43630 75.9 1.7e-72 269.2
Lsi03g00875 . 7 199 Nodulin-like Gene Family AT3G43630 63.7 3.8e-61 231.5
Lsi02g02019 . 28 203 Nodulin-like Gene Family AT3G43630 70.4 7.2e-60 227.3
Lsi08g00551 . 20 217 Nodulin-like Gene Family AT3G43660 72.7 2.4e-71 265.4
Lsi03g00875 . 7 202 Nodulin-like Gene Family AT3G43660 61.7 1.2e-62 236.5
Lsi02g02019 . 33 203 Nodulin-like Gene Family AT3G43660 70.2 2.7e-59 225.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001299 1 2 1 1 1 2 2 4 3 2 3 3 3 2 3 4 3 1 4 3 2 5 3 3 3 2 3 2 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01498 Lsi_Chr06 FPKM 81.040161 94.805641 94.726707 104.564842 62.853043 65.39106 60.8755 131.373581 126.7938 132.73587
Lsi06g01498 Lsi_Chr00 FPKM 23.092703 24.749153 25.688581 27.069422 16.15542 15.427312 15.968681 33.531933 31.868954 35.114491