Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01501 ATGAAATCGGAGGGAGGTCGTAATAAACGGGATCCGACATCGAGCAACAGAGCTCGAGAAGAATCCATGGTGGCCATTTCCCTTTACAGAGGGAACCTCCACAGGGTCCCCGATGTTCCTCGTCGATGGCTTATGCCGACCCACAACATATCTGTTAAAGACTTCAAATCCCTTCTCCAACGTCGTTCAAAAGCCCTCTCTCGCCTCCTTGCCACCACCTCTTCTTCTCCGGCTAAACTTTCTACTTCCCCTAACCCTAACCCTAATTCCAATTCTCCAATTAAACCGGAAGGTGATGTGCCCAGAAATAATGGCTCGGCGTCCGAGGTTCCATTGGAAACTCAAAGGTTTAGTGTTGGTGGAGAAAGACCTTCTGCGCTTGTCAAGGAGAGGAAAAAGTCGGACATTGGTGATAATTGTATGGGAAAATCGGCTGATGGGTTTGATTCTCTGAATGGCCCGAAATCTTGTTTTGCCGAGCAGGGTTCTAATCCAGTGGAAAATGGTGGCGCGCATGTAAAAGATGAAAATCCTGCTGTATTAGAAAACCCTAACAAAGAGGTAAACAAAGAGGAGGATTTGTTAGATGACAAGGAGAACAGGAAAAGGGAAGTTGAAGAGAAGTTAAAAGTTTTGAATGAAAAAAAACATAATCTTGTGCAAGTGTTAAAGCAGATCTTGCATGTGGAAGAGGAATTAAAAAGGCGTAGTAGTGTGCAAGGGACGGCAATTCGCCCTTCTGCTCCTCTTCAAGTGGATGCCTCAGCCGATACGGGTTCAATGACCAGACAGCTTGCTCCTAGGGTAGGTTCAGAAGTGAATGCTAGTGGAGATACTGAAGGTGGAGAAGCTGATGATCTTTTGAACCAGAATGTTCTTGCTTGTCAAATGCTTCGGAATAGCAGTATGTCACCTTCTTCAGAGTCCCCTCTTAGAAGGCCTGCCCACATTCAACCCAATATGGGCTCACATCCATCCCGAGCAAATTTTAGTGTTACTGGGAGCCCATCGTGCCTTCCTCCAGCTGGGCAATCAGGGCTTCCTCCAAACCTGCCCACTGTATCTGTATCTGGAACCAACTACATTGCATCCTCACCTTCTCCTGCAGCATCTGGGGGCACTTCAGTTCTCAGAGATGCTTGGCAGCCCAGCCCATGGAATTAG 1164 47.25 MKSEGGRNKRDPTSSNRAREESMVAISLYRGNLHRVPDVPRRWLMPTHNISVKDFKSLLQRRSKALSRLLATTSSSPAKLSTSPNPNPNSNSPIKPEGDVPRNNGSASEVPLETQRFSVGGERPSALVKERKKSDIGDNCMGKSADGFDSLNGPKSCFAEQGSNPVENGGAHVKDENPAVLENPNKEVNKEEDLLDDKENRKREVEEKLKVLNEKKHNLVQVLKQILHVEEELKRRSSVQGTAIRPSAPLQVDASADTGSMTRQLAPRVGSEVNASGDTEGGEADDLLNQNVLACQMLRNSSMSPSSESPLRRPAHIQPNMGSHPSRANFSVTGSPSCLPPAGQSGLPPNLPTVSVSGTNYIASSPSPAASGGTSVLRDAWQPSPWN 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25460672 25463920 + Lsi06G015010.1 Lsi06g01501 666231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01501 387 MobiDBLite consensus disorder prediction 301 387 - -
Lsi06g01501 387 MobiDBLite consensus disorder prediction 322 340 - -
Lsi06g01501 387 MobiDBLite consensus disorder prediction 348 387 - -
Lsi06g01501 387 MobiDBLite consensus disorder prediction 70 97 - -
Lsi06g01501 387 PANTHER TRNA (ILE)-LYSIDINE SYNTHASE 23 387 - -
Lsi06g01501 387 MobiDBLite consensus disorder prediction 1 22 - -
Lsi06g01501 387 MobiDBLite consensus disorder prediction 1 17 - -
Lsi06g01501 387 Coils Coil 181 222 - -
Lsi06g01501 387 MobiDBLite consensus disorder prediction 70 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01501 - - K09422 bhj:120071656 644.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g474 . . Bda06g00564 . . . . Bma12g01017 . . Cma10g00167 Cma11g00172 Car10g00156 Car11g00128 Sed08g0187 . Cpe04g01524 Bhi02g00372 Tan09g2177 Cmetu02g1628 . Hepe09g0152 . . Cla06g01621 Cam06g1800 Cec06g1850 Cco06g1857 Clacu06g1760 Cmu06g1704 Cre06g2522 Cone2ag0874 Cone16ag0136 . . . . . . . Blo15g00290 . . Bpe07g00806 . . . . Cmo10g00179 Cmo11g00136 . . . . . . . . . . . . . . . . . . . . Lsi06g01501 Csa01g00198 Chy02g02533 Cme02g01917
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007145 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01501 Lsi_Chr06 FPKM 4.169006 4.11192 3.200673 3.010182 9.92513 9.947884 10.279843 4.106387 3.740377 3.604652
Lsi06g01501 Lsi_Chr00 FPKM 3.343972 3.830892 4.425419 3.992336 6.007125 7.001237 6.286241 6.575148 6.091137 5.666478
Lsi06g01501 Lsi_Chr00 FPKM 6.57861 8.633822 1.340433 0.849337 22.015402 25.918049 22.323164 0.0 0.0 0.098358
Lsi06g01501 Lsi_Chr00 FPKM 3.55692 2.768085 0.187099 0.479092 10.596205 10.409708 8.9404 0.0 0.0 0.174215
Lsi06g01501 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0