Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01503 | ATGGATCCTCCACTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTGGCCTCGATTTGGCCTTTTGGAGGGGAGCAGGGCGGGAGCGCATTGGGGCTTCGAATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGATGGATCAATGGAAGAATCGACAGTGACAGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAACGGTGGTATAAAAGCTGAAGTAGAACCTACCTCAACAGATGGTAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGTCATAGAAGGTTTTACTGTAAAAAATATCGTCAATCAAGCATATGATGCAGCTGGAATATTATATGGTTCACAAGCGGCAAGAGATTATACCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATTGGTGGGAGTTTTGAAAGAACGTCTTAG | 765 | 44.84 | MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPTSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPVIEGFTVKNIVNQAYDAAGILYGSQAARDYTQGAQPEWLHMQIGGSFERTS | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25472081 | 25476019 | + | Lsi06G015030.1 | Lsi06g01503 | 666233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01503 | 254 | Coils | Coil | 178 | 198 | - | - | |
Lsi06g01503 | 254 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 163 | IPR024097 | GO:0006355 | |
Lsi06g01503 | 254 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 163 | 253 | IPR024097 | GO:0006355 | |
Lsi06g01503 | 254 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
Lsi06g01503 | 254 | MobiDBLite | consensus disorder prediction | 47 | 68 | - | - | |
Lsi06g01503 | 254 | MobiDBLite | consensus disorder prediction | 47 | 142 | - | - | |
Lsi06g01503 | 254 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
Lsi06g01503 | 254 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 164 | 200 | IPR036638 | GO:0046983 | |
Lsi06g01503 | 254 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 163 | - | - | |
Lsi06g01503 | 254 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 163 | 253 | - | - | |
Lsi06g01503 | 254 | MobiDBLite | consensus disorder prediction | 105 | 142 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00182 | Lsi-Chr2:1559712 | Lsi06g01503 | Lsi-Chr6:25472081 | 2.84E-11 | dispersed | |
Lsi06g01503 | Lsi-Chr6:25472081 | Lsi08g00756 | Lsi-Chr8:15904120 | 3.88E-75 | dispersed | |
Lsi06g01503 | Lsi-Chr6:25472081 | Lsi11g01112 | Lsi-Chr11:19468218 | 5.15E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01503 | - | - | csv:101215588 | 454.521 |