Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01503 ATGGATCCTCCACTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTGGCCTCGATTTGGCCTTTTGGAGGGGAGCAGGGCGGGAGCGCATTGGGGCTTCGAATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGATGGATCAATGGAAGAATCGACAGTGACAGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAACGGTGGTATAAAAGCTGAAGTAGAACCTACCTCAACAGATGGTAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGTCATAGAAGGTTTTACTGTAAAAAATATCGTCAATCAAGCATATGATGCAGCTGGAATATTATATGGTTCACAAGCGGCAAGAGATTATACCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATTGGTGGGAGTTTTGAAAGAACGTCTTAG 765 44.84 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPTSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPVIEGFTVKNIVNQAYDAAGILYGSQAARDYTQGAQPEWLHMQIGGSFERTS 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25472081 25476019 + Lsi06G015030.1 Lsi06g01503 666233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01503 254 Coils Coil 178 198 - -
Lsi06g01503 254 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 163 IPR024097 GO:0006355
Lsi06g01503 254 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 163 253 IPR024097 GO:0006355
Lsi06g01503 254 MobiDBLite consensus disorder prediction 85 104 - -
Lsi06g01503 254 MobiDBLite consensus disorder prediction 47 68 - -
Lsi06g01503 254 MobiDBLite consensus disorder prediction 47 142 - -
Lsi06g01503 254 MobiDBLite consensus disorder prediction 69 84 - -
Lsi06g01503 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 200 IPR036638 GO:0046983
Lsi06g01503 254 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 163 - -
Lsi06g01503 254 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 163 253 - -
Lsi06g01503 254 MobiDBLite consensus disorder prediction 105 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00182 Lsi-Chr2:1559712 Lsi06g01503 Lsi-Chr6:25472081 2.84E-11 dispersed
Lsi06g01503 Lsi-Chr6:25472081 Lsi08g00756 Lsi-Chr8:15904120 3.88E-75 dispersed
Lsi06g01503 Lsi-Chr6:25472081 Lsi11g01112 Lsi-Chr11:19468218 5.15E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01503 - - csv:101215588 454.521