Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01504 ATGCTTGTTTCCTTCATTATACTCTTGCTTCTTCCTTATCCTTCTTTGTCGACCGATCCCGATCCGTTGCAGGACTTCTGTGTTGCTGATTTAAATGCAACTGTTTCCCTTAGTGGCTTCCCTTGCAAGCCAGCTTCAAAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGCAAAGAAGGCAACACAGATAATCCTTTTGGTTTTGGCCTTACACCAGGAAATGTTTTTGCATTGCCAGGACTCAATACACTTGGACTATCGATGAACCGTATCGACCTTGCTCCGGGAGGAATGAATCCACCTCACTTGCATCCTCGTGCCTCCGAAATCGTTATCGTCATTAAAGGGAAAGTTCTTGTTGGGTTTATGACAGTTGATAATAAGTATTATCATAAGATTTTGACTGTAGGGCAGATGTTCATTGTCCCCAGAGCACTTGTTCATTTCCAGTATAATGTTGGACATAGGAAAGCTATTGTGCTTGCAGGTTTCAACAGTCAGTTGCCAGGGGGCGTGCTCGTTGCCGGAAATTTGTTCGCTTCAAATCCTCCGATCCCTGTTAAAATTCTGTCTAAGGCCTTACTGGTTGATGACGGTGTTATCAACACTATAAAGTCTGAGTTTGCTGCTTAG 639 43.04 MLVSFIILLLLPYPSLSTDPDPLQDFCVADLNATVSLSGFPCKPASKVTADDFFFDGLSKEGNTDNPFGFGLTPGNVFALPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGFMTVDNKYYHKILTVGQMFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASNPPIPVKILSKALLVDDGVINTIKSEFAA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25476879 25477517 - Lsi06G015040.1 Lsi06g01504 666234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01504 212 PRINTS Germin signature 167 182 IPR001929 GO:0030145
Lsi06g01504 212 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Lsi06g01504 212 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Lsi06g01504 212 Gene3D Jelly Rolls 18 212 IPR014710 -
Lsi06g01504 212 SUPERFAMILY RmlC-like cupins 19 210 IPR011051 -
Lsi06g01504 212 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Lsi06g01504 212 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 211 - -
Lsi06g01504 212 Pfam Cupin 58 200 IPR006045 -
Lsi06g01504 212 SMART Cupin_1_3 56 204 IPR006045 -
Lsi06g01504 212 CDD cupin_OxOx 19 210 - -
Lsi06g01504 212 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED 4 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01504 - - - csv:101215347 327.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01504 Lsi-Chr6:25476879 Lsi01g00065 Lsi-Chr1:704459 2.11E-70 dispersed
Lsi06g01504 Lsi-Chr6:25476879 Lsi06g01505 Lsi-Chr6:25480992 6.23E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004893 1 2 1 1 1 2 0 2 2 2 1 2 1 2 2 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01504 Lsi_Chr06 FPKM 679.736633 729.637817 2271.925781 2183.841064 999.838196 961.365356 1030.738159 3510.529541 4023.502441 3660.729492
Lsi06g01504 Lsi_Chr00 FPKM 1085.935669 1126.148682 1334.918823 1430.392334 568.221008 653.651001 601.821716 2382.532715 2580.980713 2523.770508