Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01505 ATGCTGTTGACGAACCAGCGAAGTCCAGCCGGAGTGCACTTGGGTCGGAGCCCAAAAACCAGAAGGTGGGCAATTTCCGAAGCCCCAATGCTCCGAAACTATAAACCATTGTTACCCATTGCAGCCAAGTCAATATTCAATCGCCTCCCACCTTCAGCTTTCCAACAATCCCTTCCTCCATTATCGCGTCCTTCATCTGGGTCCCCAAAAATGGCGAGCAACGAGCGTATCAAACCAGAAAATGATGACCAATTGAATGCCATATTTGATCAGAAACGGGTTCTTCGATCCAGCGTTCGGAAAGCCCTCAAAGCCATGGACCCCTCCCTCAGATCCCAGGAAGACAATGCAATTCAGAGTATCGTTTTGGAAGCTCCGTGGTTTAAATCTAGTCAGAGATTATGTGCTTATGTGAGTTGCAGTGCGTTAAGGGAAGTTGATACATCGAGACTATTATCAGAGACTCTTCAACACCCACCTAAAGATGGTTATTCAAAGAAGATTTATGTGCCGCGTGTGGAGGACAAGAATAGTCACATGCGGATGTTCAATATTTCACGTATGAATGATCTTATTGCAAATTCAATGAACATCTTAGAACCAGCTCCAGTGGATGGTGATGGAAATGAACGTGAAGATGTTATGCAGACAAAAGACCCCATTGATTTATTTCTCTTACCAGGACTAGCATTTGATAAATCAGGAAGACGCCTAGGCCGAGGGGGAGGGTATGGATTTGCATTTAGCCTTTCTGAGAACCTCACCTTAGTTTCTCTTTCACCTCACCTTGTTTCCCTGCAACTTCACTTGACTCAATTGGCACGATTTGCAGTTGCACTGTCCTATTCGGTGCAGATAATGGATGAAGGAATTATACCACTCACTCCTAACGATGTTTTAGTCGATGTTCTTATATCGCCATCTGGTGTGATTCCCATCAGCTCAGCTGGATTGGACAAAAGAGCTCGTCAGCATAGGAAGGCTCCTCAACAGATTACCGACCCTGATCCGTTGCAGGACTTCTGTGTTGCTGATTTAAATACTACTGTTTCCCTTAATGGCTTTCCTTGTAAGCCAGTTTCAGAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGCAAAGAGGGCAACACAGATAATCCTTTTGGTTTTGGGGTCACACAAGGAAATGTTCTTGCATTTCCAGGACTCAATACACTTGGGCTATCCATGAACCGTGTTGACCTTGCTCGGGGAGGAATAAATGCACCTCACTCGCATCCTCGTGCCTCCGAAAGCATCATCGTCATTAAAGGGAAGGTTCTTGTTGGTTTTGTGTCAACAAGCAATGTATACTATTATAAGATGTTCATTGTTCCCAGAGGACTTGTTCATTTCCAGTATAATGTTGGACATGGCAAAGCAATTCTGCTCACAGCTTTCAACAGTCAGTTACCAGGGGCCGTGATCGTCTCCCGAACTTTGTTTGCTTCAAATCCTCCGATCCCTGTCGATATTCTGACCAAGACCTTCCAAGTCGATGCTGGTGTTATCAACAGCATAAAGTCCAAAATGGAAGGAAGTGCAAGGTGTCAAAACCCCAGCCCTTCATCTCCATGA 1602 44.82 MLLTNQRSPAGVHLGRSPKTRRWAISEAPMLRNYKPLLPIAAKSIFNRLPPSAFQQSLPPLSRPSSGSPKMASNERIKPENDDQLNAIFDQKRVLRSSVRKALKAMDPSLRSQEDNAIQSIVLEAPWFKSSQRLCAYVSCSALREVDTSRLLSETLQHPPKDGYSKKIYVPRVEDKNSHMRMFNISRMNDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKSGRRLGRGGGYGFAFSLSENLTLVSLSPHLVSLQLHLTQLARFAVALSYSVQIMDEGIIPLTPNDVLVDVLISPSGVIPISSAGLDKRARQHRKAPQQITDPDPLQDFCVADLNTTVSLNGFPCKPVSEVTADDFFFDGLSKEGNTDNPFGFGVTQGNVLAFPGLNTLGLSMNRVDLARGGINAPHSHPRASESIIVIKGKVLVGFVSTSNVYYYKMFIVPRGLVHFQYNVGHGKAILLTAFNSQLPGAVIVSRTLFASNPPIPVDILTKTFQVDAGVINSIKSKMEGSARCQNPSPSSP 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25480992 25490400 - Lsi06G015050.1 Lsi06g01505 666235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01505 533 MobiDBLite consensus disorder prediction 56 72 - -
Lsi06g01505 533 SUPERFAMILY RmlC-like cupins 334 518 IPR011051 -
Lsi06g01505 533 Gene3D Jelly Rolls 333 523 IPR014710 -
Lsi06g01505 533 SMART Cupin_1_3 371 513 IPR006045 -
Lsi06g01505 533 Pfam Cupin 373 509 IPR006045 -
Lsi06g01505 533 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 64 320 - -
Lsi06g01505 533 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 64 320 - -
Lsi06g01505 533 SUPERFAMILY NagB/RpiA/CoA transferase-like 91 313 IPR037171 -
Lsi06g01505 533 Pfam 5-formyltetrahydrofolate cyclo-ligase family 92 248 IPR002698 -
Lsi06g01505 533 Gene3D - 81 314 IPR024185 -
Lsi06g01505 533 MobiDBLite consensus disorder prediction 56 79 - -
Lsi06g01505 533 CDD cupin_OxOx 334 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01505 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - csv:101211739 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01505 Lsi-Chr6:25480992 Lsi01g00065 Lsi-Chr1:704459 8.58E-65 dispersed
Lsi06g01504 Lsi-Chr6:25476879 Lsi06g01505 Lsi-Chr6:25480992 6.23E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g470 . . Bda06g00567 . . . . . . . Cma10g00162 . Car10g00153 Car11g00125 Sed08g0182 . Cpe04g01527 Bhi02g00377 Tan09g2182 Cmetu02g0955 . Hepe09g0156 . . Cla06g01624 Cam06g1805 Cec06g1856 Cco06g1862 Clacu06g1765 Cmu06g1709 Cre06g2527 . . . Cone19ag0105 . . . . . Blo15g00287 . . Bpe07g00809 . . . . Cmo10g00173 . . . . . . Cpe18g00816 . . . . . . . . . . . . . . Lsi06g01505 Csa01g00194 Chy02g02538 Cme02g01922
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007790 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01505 Lsi_Chr06 FPKM 12.628852 11.232637 9.97287 12.778299 21.928205 18.624184 16.361906 66.129707 73.311485 70.634926