Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01506 ATGCCACGTGGCAAAGATCCTCTACGGAATTCGTTGTGTTACCTAATGGTGGAGCCGTTGACCAAAGGTCAAACGGAAGATCAGACGGCTGAGATTCTGCCTTCTACCCCGAGACTGATCGAACCGAAGGGGCCCTTCCCAGTGAAAGAAGCCCTAAACGCACTGTACCATCACCCTGACGATGCCTTCCGTATGCAAGCCGATCGATGGCTTCAAGACTTCCAGCGCACTCTCGATGCCTGGCAGAATTTATTAAGAAAATTTCACAAGGGCCCACCTAAAGTTCGAACTCAGATTAGCATAGCAGTGGCTGCATTAGCAGTACATGTTCCTGCTGATGATTGGGGAGAAGGCGGTATTGTAAATTGGCTCAGGAATGAGATGAACTCACATCCAGAGTATGTACCCGGATTTTTGGAGCTACTGACAGTTTTGCCTGAGGAAGTATACAATTACAAGATCGCAGCTCGCCCGGATAGACGCCGTCAATTTGAAAAGGAACTCACATCCCAAATGGAAGTTACCCTTAATATCTTGACAGCTTGTTTGAATATTAATGAGCTGAAGGAGCAGGTGCTCGAGGCATTTGCTTCTTGGCTTCGATTAAAGCATGGGATCCCAGGATCTGTGCTTGCATCACATCCTTTAGTACTCACAGCTCTAGCAAGTTTAAATTCCGAGCTTCTCTCAGAGGCATCTGTAAACGTTATTTCTGAACTGATACACTATTCAGCAGCTGGAAACTCAAGTGGTCTCCCAGTGCACATGCCTTTAATTCAAGTAATTGTCCCTCAAGTTATGAATTTGAAGGCACAACTTAGAGATTCTTCAAAGGATGAAGAAGATGTGAAGGCCATTGCTCGGTTATATGCTGACATGGGCGATTCTTATGTTGAATTGATTGCTACTGGTTCTGATGAATCAATGTTAATAGTCCATGCCCTACTAGAAGTTACTTCACATCCTGAATATGATATTGCCTCCATGACCTTTAATTTTTGGCATAGCCTTCAGTTGAACTTGACAAAAAGGGATGCATATATTTCTTTTGGCAATGACGCTTCCATTGAAGCTGAAAGGAAAAGGAGGTTACAAATATTTTGTCCAGTTTACGAGTCACTTGTATCCTTGGTTAGTTTCAGAGTTCAATATCCTAATGACTATCAAGACCTTTCTTATGAGGACCTCAAGGAATTCAAGCAGACTAGATATGCTGTTGCAGATGTCTTAATTGATGCAGCATTGGTTTTAGGAGGTGATATGACCCTGAAAATTCTTTACGTGAGGCTTGTGGAGGCTGTTACAAGCTGTGGAAATAGTGAACAGAGTGAATGGCGTCCAGCAGAGGCTGCTTTGTTTTGCATCCGAGCTATATCAGATTATGTTTCAGTTGGTGAGGCAGAAATAATGCCGCAGGTCATGGGTTTACTTCCAAAACTTCCTCAGCAAGCCCAACTACTTCAGACAGTGTGCTACACTGTTGGAGCATACTCGAAGTGGCTTGACGCATCATCAAGTGGGCAATCGATACTACCTTCAGTAATTGATATCCTCATGAGTGGAATGAGCACATCCGAGGATTCTGCAGCTGCTGCAGCTCTGGCATTTAGAGATATTTGCGCTGATTGCCGGAGAAAGCTTTGTGGATTTTTGGATGGTCTCTTCCATATATATAATGTGACGGTCAATGGAGAAAGTAGTTTGAAGGTGACTGCTGAGGACTCGCTGCACCTAGTGGAAGCATTAAGCATGGTTATCACCGAACTTGTGCCCGATCAAGCTAAAAGAGCACTGGAGGCATTGTGCTTACCTGTTGTCGCTCCTCTGCAGGAAATTGTCAACCAAGGCCCAGAAATATTGAACAAGAAGCCTTCTAATGAGTTGACAGTCCATATTGATCGGTTTGCTTATATATTCAGATATGTAAATCACCCTGAAGCTGTTGCAGATGCCATACAGAGGCTTTGGCCAATTTTTAAAGCCATCTTCGATATCCGTGCTTGGGATATGAGGACTATGGAATCTCTTTGCCGAGCGTGCAAATATGCTGTGAGAACTTCCGGTAGATTTATGGGAATCACAATTGGAGCGATGTTAGAAGAAATTCAAGGTCTATATAAGCAGCACCACCAGCCTTGCTTTCTTTATCTCTCTAGTGAAGTTATAAAGATTTTTGGTTCTGATCCATCTTGCGCAAGTTATCTCCAAAGTTTGATTGAAGCATTATTCATGCACACAACACGTCTTCTCACAAGTATTCAGGAATTTACTGCTAGGCCGGATATTGCTGATGACTGCTTTCTTTTGGCCTCAAGATGTATACGCTATTGCCCTCAATTATTTATTCCATCTTCGGTATTTCCAGCATTAATAGATTGTTCGATGGTCGGAATCACAGTACAGCACAGGGAAGCCTCAAATTCAATATTGACTTTCTTGGCTGATGTTTTTGATCTTGCAAATTCAACCAAAAGTGAACAGTATATATCTAGAAGGGATGCAGTAGTTATACCTCGAGGTCACGTTATCCTTCGAATTTTGGTTGCAGCCTTGACAGGGGCACTACCAAGTTCTCGATTAGAACCGGTGACGTACACACTATTAGCGTTAACTCGAGCTTATAGAGTACAAGCGTTAGAGTGGGCCAAGGAAAGTGTTTCATTGATTCCATCAACGGCTGTTACTGAAAAAGAGCGGTCGAGATTTCTAAAAGCGTTATCAGATGCAGCTTCAGGATGCGATATAAATACGCTTGCTGTACCAATAGAAGAGCTCTCAGACCCCGCCCAGAAGAAATTCACGGCTGGCTTTGATAATTTTGTCGATCTTCTTCAACTTTTCAAGGGTTTCATTCATCGATTGGATTCTCCAGCAACAATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTTGTAGCCAATCTCACGAAGCTAACGATTCCTTCGTCGTCTTCTTCTTCTTCTCCTCCTTCATCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAATAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACTTCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTTGATTCACAGAGCGAAGGTGAGGAGGAAGAAGAAGATGAACTAGAAATCTCGACTCGCAATGGAGATCAAGAGGAGAAGAAAATGGTGGGTGAAACTGAAAATATTGATGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGTGTTGTGGGAAAAGGGGCATTTGGGAAGGTATTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTAATAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTCCGCTACTCATTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTATCGGCTGTTTCGCATCTTCACAACTGCGGTATTGTGCACCGTGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGTCATAACAAAGATGCTGATTGGTGGAGCGTTGGAGTTCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACACGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTCCCACCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTTCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCTAATGGAGGGGACGAGATAAAAAAACATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAATGACTGCACAGCAAATTTCGATCATTGTTGGACAGCAATGCCCCCGGACGACTCACCAGCTCCAACGCCGACAGATGGTGGACACTTCCAGGGATATAGCTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 4323 43.56 MPRGKDPLRNSLCYLMVEPLTKGQTEDQTAEILPSTPRLIEPKGPFPVKEALNALYHHPDDAFRMQADRWLQDFQRTLDAWQNLLRKFHKGPPKVRTQISIAVAALAVHVPADDWGEGGIVNWLRNEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTSQMEVTLNILTACLNINELKEQVLEAFASWLRLKHGIPGSVLASHPLVLTALASLNSELLSEASVNVISELIHYSAAGNSSGLPVHMPLIQVIVPQVMNLKAQLRDSSKDEEDVKAIARLYADMGDSYVELIATGSDESMLIVHALLEVTSHPEYDIASMTFNFWHSLQLNLTKRDAYISFGNDASIEAERKRRLQIFCPVYESLVSLVSFRVQYPNDYQDLSYEDLKEFKQTRYAVADVLIDAALVLGGDMTLKILYVRLVEAVTSCGNSEQSEWRPAEAALFCIRAISDYVSVGEAEIMPQVMGLLPKLPQQAQLLQTVCYTVGAYSKWLDASSSGQSILPSVIDILMSGMSTSEDSAAAAALAFRDICADCRRKLCGFLDGLFHIYNVTVNGESSLKVTAEDSLHLVEALSMVITELVPDQAKRALEALCLPVVAPLQEIVNQGPEILNKKPSNELTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYKQHHQPCFLYLSSEVIKIFGSDPSCASYLQSLIEALFMHTTRLLTSIQEFTARPDIADDCFLLASRCIRYCPQLFIPSSVFPALIDCSMVGITVQHREASNSILTFLADVFDLANSTKSEQYISRRDAVVIPRGHVILRILVAALTGALPSSRLEPVTYTLLALTRAYRVQALEWAKESVSLIPSTAVTEKERSRFLKALSDAASGCDINTLAVPIEELSDPAQKKFTAGFDNFVDLLQLFKGFIHRLDSPATMVSASTRQKNMHSLLVANLTKLTIPSSSSSSSPPSSAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTSPASLPFFREVDSQSEGEEEEEDELEISTRNGDQEEKKMVGETENIDGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKKHKWFRPVNWKKLECRELQPKFKPDVNGNDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 1440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25490687 25511259 + Lsi06G015060.1 Lsi06g01506 666236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01506 1440 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 83 928 - -
Lsi06g01506 1440 MobiDBLite consensus disorder prediction 1058 1084 - -
Lsi06g01506 1440 Gene3D Transferase(Phosphotransferase) domain 1 1195 1390 - -
Lsi06g01506 1440 SMART serkin_6 1107 1371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01506 1440 MobiDBLite consensus disorder prediction 1009 1023 - -
Lsi06g01506 1440 ProSiteProfiles Protein kinase domain profile. 1107 1371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01506 1440 Pfam Protein kinase C terminal domain 1392 1429 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lsi06g01506 1440 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 48 82 - -
Lsi06g01506 1440 PANTHER TRANSPORTIN MOS14 83 928 - -
Lsi06g01506 1440 SUPERFAMILY Protein kinase-like (PK-like) 1104 1433 IPR011009 -
Lsi06g01506 1440 MobiDBLite consensus disorder prediction 1006 1027 - -
Lsi06g01506 1440 ProSiteProfiles AGC-kinase C-terminal domain profile. 1372 1439 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi06g01506 1440 ProSitePatterns Protein kinases ATP-binding region signature. 1113 1144 IPR017441 GO:0005524
Lsi06g01506 1440 MobiDBLite consensus disorder prediction 1061 1076 - -
Lsi06g01506 1440 PANTHER TRANSPORTIN MOS14 48 82 - -
Lsi06g01506 1440 Gene3D Phosphorylase Kinase; domain 1 1106 1413 - -
Lsi06g01506 1440 SMART pkinase_C_6 1372 1431 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi06g01506 1440 Gene3D - 47 919 IPR011989 -
Lsi06g01506 1440 SUPERFAMILY ARM repeat 49 959 IPR016024 -
Lsi06g01506 1440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1234 1246 IPR008271 GO:0004672|GO:0006468
Lsi06g01506 1440 CDD STKc_AGC 1113 1371 IPR045270 GO:0004674|GO:0005524
Lsi06g01506 1440 Pfam Exportin 1-like protein 92 237 IPR013598 -
Lsi06g01506 1440 Pfam Protein kinase domain 1108 1371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00123 Lsi-Chr4:1376423 Lsi06g01506 Lsi-Chr6:25490687 1.75E-48 dispersed
Lsi05g00419 Lsi-Chr5:5315951 Lsi06g01506 Lsi-Chr6:25490687 1.77E-14 dispersed
Lsi06g01506 Lsi-Chr6:25490687 Lsi09g00549 Lsi-Chr9:5801276 2.02E-62 dispersed
Lsi06g01506 Lsi-Chr6:25490687 Lsi06g00299 Lsi-Chr6:3436514 7.72E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83748 PF00069 Pkinase 6.50E-71 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01506 K15436 - csv:101215103 1647.87