Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01512 ATGGTTACTGATTCGATCGCCAATGCTTCAATTTCTTTGGCCCCAAACGCCAGGGATTTGCCCCTGCCCAAGAAGAAGAGGGTCAGGAATTCCAAATTGAAGCAGTCTAAGCTTGACGTTCGTCGGGAACAATGGCTTTCTCGAGGTGTTGTAAAGAACAAAAAATGGAACGAAGAAGACAATCGGCTTGATTCAGTGGTCATTAAAACGAGGGAAGATGATAACCTTTCCTCCAAAAAAATAAATATGAGGGAAATAGGAGAAGAGAACGACAGATCGGTCCACCACCATAGCGATTTTTCGGACTCACCGTCTAATAGCCCCCCTAGTCTTGGCAGTAGTATCTTGGGTGGAAATGATTCGGGTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGCTCTAGTGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAGGAAGAAGAAGAAGAAGAAGGAGATGATGACTGCTTGGATGATTGGGAGGCTATTGCCGATGCCCTAGCCGCCACTGACAAGCAACATGATCGATGTTCCGAGTCTTCCCCTAGAGGCAATGTTGTTTCTCAATTGGATTCTTGTGGAGACAGCAGAAATGAGTTGGGTGTAGGAGATGGTGACTCGAGTGTTGAGCGTGGGAGAATTGCGCAGAGGGCTTCGATAAATTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACGTTATCGAAGCAGCTTAGTTTACCGAATACAGACCGTCGTTTTGGATGTGGAGGCATCCCTTGGGCCTGTGGTGGTGTTATGCCTGTGCCTATATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTCCGGCTATGCCTTTTCTGTCATAAGAGGATTCTTGAAGAAGATGGGCGCTGTCCTGGCTGCAGGAAGCCATATGATCGTGATCCTGCCGACAATGAGACAAATGTACATGGTGGCAGCCCAACGTTCCCATTGGCCCGTTCTTGTAGCATGATTTCAAGGTCTTAG 1056 47.82 MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGVVKNKKWNEEDNRLDSVVIKTREDDNLSSKKINMREIGEENDRSVHHHSDFSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEEEGDDDCLDDWEAIADALAATDKQHDRCSESSPRGNVVSQLDSCGDSRNELGVGDGDSSVERGRIAQRASINCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGIPWACGGVMPVPISCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNVHGGSPTFPLARSCSMISRS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25555093 25556878 + Lsi06G015120.1 Lsi06g01512 666242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01512 351 CDD mRING-HC-C4C4_CNOT4 276 319 IPR039515 -
Lsi06g01512 351 MobiDBLite consensus disorder prediction 176 214 - -
Lsi06g01512 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 333 IPR013083 -
Lsi06g01512 351 MobiDBLite consensus disorder prediction 79 99 - -
Lsi06g01512 351 MobiDBLite consensus disorder prediction 185 200 - -
Lsi06g01512 351 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 349 - -
Lsi06g01512 351 MobiDBLite consensus disorder prediction 100 144 - -
Lsi06g01512 351 SUPERFAMILY RING/U-box 274 326 - -
Lsi06g01512 351 Pfam RING/Ubox like zinc-binding domain 276 322 - -
Lsi06g01512 351 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 8 349 IPR039780 GO:0004842|GO:0030014
Lsi06g01512 351 MobiDBLite consensus disorder prediction 1 39 - -
Lsi06g01512 351 MobiDBLite consensus disorder prediction 79 160 - -
Lsi06g01512 351 ProSiteProfiles Zinc finger RING-type profile. 276 318 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01512 - - - csv:101211244 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01512 Lsi-Chr6:25555093 Lsi10g01314 Lsi-Chr10:17353245 1.89E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g676 Blo04g00751 . Bda06g00572 . Bpe12g00575 . . Bma12g01021 . . Cma10g00156 . Car10g00147 Car11g00118 Sed08g0176 . Cpe04g01533 Bhi02g00382 Tan09g2191 Cmetu02g0486 . Hepe09g0162 . . Cla06g01630 Cam06g1812 Cec06g1862 Cco06g1867 Clacu06g1771 Cmu06g1713 Cre06g2532 . . Cone13ag0110 Cone19ag0114 . . . . Blo13g00040 . . Bda14g00830 Bpe07g00814 Bpe15g00621 Bma03g00804 Bma08g00187 . Cmo10g00168 Cmo11g00125 . . . . . Cpe18g00821 . . . . . . . . . . . . . . Lsi06g01512 Csa01g00188 Chy02g02545 Cme02g01929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004379 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01512 Lsi_Chr06 FPKM 1.918487 2.570036 2.667022 1.94921 2.202784 3.096116 2.809571 4.05204 4.749261 3.868083