Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01513 ATGGCGACGGTTCCTGACCTTCTCCGACGCAACCCCATCGACGGACTTGTTGGGGTTTCTGACGTTTCGAAACAGAGTAGTAGTTCCAGTTCGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGGTTGTTGAAGATCTCGTCATGTAAAGTTACTGCTGTTGAGAGTGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAGAAATTCTTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGGAGGAAAGAAAATTGGTTTAAAGAGGAAGCTCCATCTTGATCACGATCACAACCCCTTGTCTCCGGTTTCTCCGGCGTCATCAGTGGCAGCGTTCGACCCTTGCCAAGGATTTCTGCAACGATCACCGCCGACATTACGACCATCGCGGATCATACTTTCATCAAAGAAACCTAGATATTCCGAAGACGAAGACGAAGACGAAGACTCTGAGCCAAAGCAGAGAGCCTCATCGGAGCTAAGGAAAATGACTCATTCAAAGCTTGAAGACGCCACTGGTTTGAAGGAAGACCTCATCGCAGACGCCTGGTCCGCCGCCATTAAAGCTCACAAGCATCCGAAGCCATTTCTCCTTGATAAAACCCGGGATTTCTCCATCATCAGCTTCGCCGGATCTTGGTCGCCCGAAGCTTGGTTCTCTGCTTCCGATTCGTCTTTTGGAGAAACAAAGATCGACACTCGGCTGTTTCCTTCCATCAGGAGCATCGGCGTCGATGATTATGCCGTCGTCAACTCTGCATTCTTCCAGAGATTTGAGGGAATTTTGGGGAAGCTTAAGGAGGTTCTGAGAGTGAATAAGCCTGTGGTGTTTACCGGCCACTCCGCCGGAGGGCCGATAGCCATTCTTGCAACCATCTGGCTGTTGGAACAGCAAAGAAACTCAGACTCAAACGCCAACTTCACTCCTCCAAAATGCATCACATTTGGATCTCCCCTTGTTGGTAACTTCATTTTCTCTCATGCTCTCAAAAGGGAGAAATGGTCCATCCATTTCGTGCACTTTGTCTCGAGATACGACATCGTTCCACGAATCCATCTCGCTCCTCTACCTTCCTTGCAACCACAACTGCAAACCATTCTCAACTCCCTGAACTCGAGATCACCAGGGTCGTCTTCGAATGGAAACGTAGCTACTGAATTCTTCATGACGGTGATGAGGAATGCGTCGGCTGTGGTAAGCAATGCCGCATGCCATCTTATGGGAAACACTAACCTTTTGCTAGACACTTTGAAAAGCTTTGTGAAATTGAGTCCTTATAGCCCTTTTGGCACTTACATTTTCTTTACTGGGAGTGAGAAAGTGGTAGTGGTGAGCAACCCAGATGCTGTTTTACAAATACTATTCTACGCTTGTCAATTGAGCTCTGAGAGCGAATGTGATCACATTGCTCAACAGAGTTTAAACACCCATTGGAGTTATGAATCTAAAATGCAGAAATTGGAGCTCCTGCATGCCATTCGTCTAGATGAATTGGATAAGCTTCCGTTGTCTTTAACGAGCAGGAACACACCAATAACTGAAGCGTTGAATGAACTTGGCCTAAGTCCGAGTGCTTTATTGAATCTTCGAGCAGCGGGCACATTTGAAGAGCAGAAAATAAAAAATCAAGAAAGAATGGAAGCAAAGAAACAATATATCGAGGAACGATTGAATTGGCTAGAAGAAAATTACAAAGCTGTATGTAAGGCTGACGGTTTGGGATATTATGATGCATTTAAACTCCAGAAGGATCCAAAAGACTTCCAAGCTAATATCAAGAGGCTTGAGCAAGCAGGTATATGGGATGAGATCGTAGAGATGCTCAAAAGATACGAGCTCCCAGAGGAATTCGAGGGCGATGACGAATGGATAAAACTTGGAACCAGGTTTCGGCGTCTTGTTGAGCCTCTAGATATTGCTAACTACTATAGACACTCAAAGAATGATGATACCGGTCCTTATCTAATAAAAGGAAGGCCGAAACGTTACAGATTTACGCAAAGATGGCTCGAACATAATCAAAAGATGACAGAGCCCAGTGAAGAATCAACTCTTTGGGCAAGGATTGAGGAACTTCGTATCCAAACCAAAACCAAAATGTACGCTGAATATTCAAGAGAAATTATAGAGCTGGAGAAGAAGATGAAGCGATGGGTCAATGAGATTGAAGATGATATGTTGTTAAAGAAATCTACATTCATGGAGTGGTGGAAGACACTTCCTGAGCATCATAGATCACAGTCTTGTATTAAGGATGATATCGAGAGAATGGCGACTGATGAGGATGCTATTAACACAATGTAG 2568 44.24 MATVPDLLRRNPIDGLVGVSDVSKQSSSSSSTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGERNSSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENGGKKIGLKRKLHLDHDHNPLSPVSPASSVAAFDPCQGFLQRSPPTLRPSRIILSSKKPRYSEDEDEDEDSEPKQRASSELRKMTHSKLEDATGLKEDLIADAWSAAIKAHKHPKPFLLDKTRDFSIISFAGSWSPEAWFSASDSSFGETKIDTRLFPSIRSIGVDDYAVVNSAFFQRFEGILGKLKEVLRVNKPVVFTGHSAGGPIAILATIWLLEQQRNSDSNANFTPPKCITFGSPLVGNFIFSHALKREKWSIHFVHFVSRYDIVPRIHLAPLPSLQPQLQTILNSLNSRSPGSSSNGNVATEFFMTVMRNASAVVSNAACHLMGNTNLLLDTLKSFVKLSPYSPFGTYIFFTGSEKVVVVSNPDAVLQILFYACQLSSESECDHIAQQSLNTHWSYESKMQKLELLHAIRLDELDKLPLSLTSRNTPITEALNELGLSPSALLNLRAAGTFEEQKIKNQERMEAKKQYIEERLNWLEENYKAVCKADGLGYYDAFKLQKDPKDFQANIKRLEQAGIWDEIVEMLKRYELPEEFEGDDEWIKLGTRFRRLVEPLDIANYYRHSKNDDTGPYLIKGRPKRYRFTQRWLEHNQKMTEPSEESTLWARIEELRIQTKTKMYAEYSREIIELEKKMKRWVNEIEDDMLLKKSTFMEWWKTLPEHHRSQSCIKDDIERMATDEDAINTM 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25558287 25565911 - Lsi06G015130.1 Lsi06g01513 666243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01513 855 Pfam Lipase (class 3) 295 440 IPR002921 GO:0006629
Lsi06g01513 855 MobiDBLite consensus disorder prediction 239 254 - -
Lsi06g01513 855 MobiDBLite consensus disorder prediction 218 254 - -
Lsi06g01513 855 Pfam Response regulator receiver domain 36 156 IPR001789 GO:0000160
Lsi06g01513 855 ProSiteProfiles Response regulatory domain profile. 35 164 IPR001789 GO:0000160
Lsi06g01513 855 PANTHER PROTEIN EDS1-RELATED 251 842 IPR044214 GO:0006952
Lsi06g01513 855 Pfam Enhanced disease susceptibility 1 protein EP domain 650 839 IPR041266 -
Lsi06g01513 855 CDD REC_typeA_ARR 36 159 - -
Lsi06g01513 855 Gene3D alpha/beta hydrolase 280 575 IPR029058 -
Lsi06g01513 855 SUPERFAMILY alpha/beta-Hydrolases 286 451 IPR029058 -
Lsi06g01513 855 Gene3D - 33 188 - -
Lsi06g01513 855 Coils Coil 782 809 - -
Lsi06g01513 855 SUPERFAMILY CheY-like 33 159 IPR011006 -
Lsi06g01513 855 Coils Coil 631 651 - -
Lsi06g01513 855 PANTHER PROTEIN EDS1-RELATED 251 842 - -
Lsi06g01513 855 SMART REC_2 34 160 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01513 Lsi-Chr6:25558287 Lsi09g00795 Lsi-Chr9:9086452 1.53E-46 dispersed
Lsi01g01992 Lsi-Chr1:26668485 Lsi06g01513 Lsi-Chr6:25558287 1.57E-46 transposed
Lsi03g01426 Lsi-Chr3:25228328 Lsi06g01513 Lsi-Chr6:25558287 9.71E-13 transposed
Lsi04g01015 Lsi-Chr4:11453891 Lsi06g01513 Lsi-Chr6:25558287 2.17E-48 transposed
Lsi04g00507 Lsi-Chr4:4705253 Lsi06g01513 Lsi-Chr6:25558287 1.57E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25548 PF18117 EDS1_EP 1.20E-52 No_clan Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01513 K18875 - csv:101214385 1028.85