Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01513 ATGGCGACGGTTCCTGACCTTCTCCGACGCAACCCCATCGACGGACTTGTTGGGGTTTCTGACGTTTCGAAACAGAGTAGTAGTTCCAGTTCGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGGTTGTTGAAGATCTCGTCATGTAAAGTTACTGCTGTTGAGAGTGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAGAAATTCTTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGGAGGAAAGAAAATTGGTTTAAAGAGGAAGCTCCATCTTGATCACGATCACAACCCCTTGTCTCCGGTTTCTCCGGCGTCATCAGTGGCAGCGTTCGACCCTTGCCAAGGATTTCTGCAACGATCACCGCCGACATTACGACCATCGCGGATCATACTTTCATCAAAGAAACCTAGATATTCCGAAGACGAAGACGAAGACGAAGACTCTGAGCCAAAGCAGAGAGCCTCATCGGAGCTAAGGAAAATGACTCATTCAAAGCTTGAAGACGCCACTGGTTTGAAGGAAGACCTCATCGCAGACGCCTGGTCCGCCGCCATTAAAGCTCACAAGCATCCGAAGCCATTTCTCCTTGATAAAACCCGGGATTTCTCCATCATCAGCTTCGCCGGATCTTGGTCGCCCGAAGCTTGGTTCTCTGCTTCCGATTCGTCTTTTGGAGAAACAAAGATCGACACTCGGCTGTTTCCTTCCATCAGGAGCATCGGCGTCGATGATTATGCCGTCGTCAACTCTGCATTCTTCCAGAGATTTGAGGGAATTTTGGGGAAGCTTAAGGAGGTTCTGAGAGTGAATAAGCCTGTGGTGTTTACCGGCCACTCCGCCGGAGGGCCGATAGCCATTCTTGCAACCATCTGGCTGTTGGAACAGCAAAGAAACTCAGACTCAAACGCCAACTTCACTCCTCCAAAATGCATCACATTTGGATCTCCCCTTGTTGGTAACTTCATTTTCTCTCATGCTCTCAAAAGGGAGAAATGGTCCATCCATTTCGTGCACTTTGTCTCGAGATACGACATCGTTCCACGAATCCATCTCGCTCCTCTACCTTCCTTGCAACCACAACTGCAAACCATTCTCAACTCCCTGAACTCGAGATCACCAGGGTCGTCTTCGAATGGAAACGTAGCTACTGAATTCTTCATGACGGTGATGAGGAATGCGTCGGCTGTGGTAAGCAATGCCGCATGCCATCTTATGGGAAACACTAACCTTTTGCTAGACACTTTGAAAAGCTTTGTGAAATTGAGTCCTTATAGCCCTTTTGGCACTTACATTTTCTTTACTGGGAGTGAGAAAGTGGTAGTGGTGAGCAACCCAGATGCTGTTTTACAAATACTATTCTACGCTTGTCAATTGAGCTCTGAGAGCGAATGTGATCACATTGCTCAACAGAGTTTAAACACCCATTGGAGTTATGAATCTAAAATGCAGAAATTGGAGCTCCTGCATGCCATTCGTCTAGATGAATTGGATAAGCTTCCGTTGTCTTTAACGAGCAGGAACACACCAATAACTGAAGCGTTGAATGAACTTGGCCTAAGTCCGAGTGCTTTATTGAATCTTCGAGCAGCGGGCACATTTGAAGAGCAGAAAATAAAAAATCAAGAAAGAATGGAAGCAAAGAAACAATATATCGAGGAACGATTGAATTGGCTAGAAGAAAATTACAAAGCTGTATGTAAGGCTGACGGTTTGGGATATTATGATGCATTTAAACTCCAGAAGGATCCAAAAGACTTCCAAGCTAATATCAAGAGGCTTGAGCAAGCAGGTATATGGGATGAGATCGTAGAGATGCTCAAAAGATACGAGCTCCCAGAGGAATTCGAGGGCGATGACGAATGGATAAAACTTGGAACCAGGTTTCGGCGTCTTGTTGAGCCTCTAGATATTGCTAACTACTATAGACACTCAAAGAATGATGATACCGGTCCTTATCTAATAAAAGGAAGGCCGAAACGTTACAGATTTACGCAAAGATGGCTCGAACATAATCAAAAGATGACAGAGCCCAGTGAAGAATCAACTCTTTGGGCAAGGATTGAGGAACTTCGTATCCAAACCAAAACCAAAATGTACGCTGAATATTCAAGAGAAATTATAGAGCTGGAGAAGAAGATGAAGCGATGGGTCAATGAGATTGAAGATGATATGTTGTTAAAGAAATCTACATTCATGGAGTGGTGGAAGACACTTCCTGAGCATCATAGATCACAGTCTTGTATTAAGGATGATATCGAGAGAATGGCGACTGATGAGGATGCTATTAACACAATGTAG 2568 44.24 MATVPDLLRRNPIDGLVGVSDVSKQSSSSSSTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGERNSSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENGGKKIGLKRKLHLDHDHNPLSPVSPASSVAAFDPCQGFLQRSPPTLRPSRIILSSKKPRYSEDEDEDEDSEPKQRASSELRKMTHSKLEDATGLKEDLIADAWSAAIKAHKHPKPFLLDKTRDFSIISFAGSWSPEAWFSASDSSFGETKIDTRLFPSIRSIGVDDYAVVNSAFFQRFEGILGKLKEVLRVNKPVVFTGHSAGGPIAILATIWLLEQQRNSDSNANFTPPKCITFGSPLVGNFIFSHALKREKWSIHFVHFVSRYDIVPRIHLAPLPSLQPQLQTILNSLNSRSPGSSSNGNVATEFFMTVMRNASAVVSNAACHLMGNTNLLLDTLKSFVKLSPYSPFGTYIFFTGSEKVVVVSNPDAVLQILFYACQLSSESECDHIAQQSLNTHWSYESKMQKLELLHAIRLDELDKLPLSLTSRNTPITEALNELGLSPSALLNLRAAGTFEEQKIKNQERMEAKKQYIEERLNWLEENYKAVCKADGLGYYDAFKLQKDPKDFQANIKRLEQAGIWDEIVEMLKRYELPEEFEGDDEWIKLGTRFRRLVEPLDIANYYRHSKNDDTGPYLIKGRPKRYRFTQRWLEHNQKMTEPSEESTLWARIEELRIQTKTKMYAEYSREIIELEKKMKRWVNEIEDDMLLKKSTFMEWWKTLPEHHRSQSCIKDDIERMATDEDAINTM 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25558287 25565911 - Lsi06G015130.1 Lsi06g01513 666243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01513 855 Pfam Lipase (class 3) 295 440 IPR002921 GO:0006629
Lsi06g01513 855 MobiDBLite consensus disorder prediction 239 254 - -
Lsi06g01513 855 MobiDBLite consensus disorder prediction 218 254 - -
Lsi06g01513 855 Pfam Response regulator receiver domain 36 156 IPR001789 GO:0000160
Lsi06g01513 855 ProSiteProfiles Response regulatory domain profile. 35 164 IPR001789 GO:0000160
Lsi06g01513 855 PANTHER PROTEIN EDS1-RELATED 251 842 IPR044214 GO:0006952
Lsi06g01513 855 Pfam Enhanced disease susceptibility 1 protein EP domain 650 839 IPR041266 -
Lsi06g01513 855 CDD REC_typeA_ARR 36 159 - -
Lsi06g01513 855 Gene3D alpha/beta hydrolase 280 575 IPR029058 -
Lsi06g01513 855 SUPERFAMILY alpha/beta-Hydrolases 286 451 IPR029058 -
Lsi06g01513 855 Gene3D - 33 188 - -
Lsi06g01513 855 Coils Coil 782 809 - -
Lsi06g01513 855 SUPERFAMILY CheY-like 33 159 IPR011006 -
Lsi06g01513 855 Coils Coil 631 651 - -
Lsi06g01513 855 PANTHER PROTEIN EDS1-RELATED 251 842 - -
Lsi06g01513 855 SMART REC_2 34 160 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01513 K18875 EDS1; enhanced disease susceptibility 1 protein - csv:101214385 1028.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01513 Lsi-Chr6:25558287 Lsi09g00795 Lsi-Chr9:9086452 1.53E-46 dispersed
Lsi01g01992 Lsi-Chr1:26668485 Lsi06g01513 Lsi-Chr6:25558287 1.57E-46 transposed
Lsi03g01426 Lsi-Chr3:25228328 Lsi06g01513 Lsi-Chr6:25558287 9.71E-13 transposed
Lsi04g01015 Lsi-Chr4:11453891 Lsi06g01513 Lsi-Chr6:25558287 2.17E-48 transposed
Lsi04g00507 Lsi-Chr4:4705253 Lsi06g01513 Lsi-Chr6:25558287 1.57E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 1 189 Response Regulator Gene Family AT1G59940 61.7 7.8e-56 214.5
Lsi06g01513 . 8 179 Response Regulator Gene Family AT1G59940 60.5 1.0e-47 187.6
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G59940 57.1 4.6e-40 162.2
Lsi09g00795 . 5 152 Response Regulator Gene Family AT1G59940 58.1 6.0e-40 161.8
Lsi04g01015 . 18 150 Response Regulator Gene Family AT1G59940 61.7 3.3e-38 156.0
Lsi04g00507 . 16 185 Response Regulator Gene Family AT1G10470 66.5 3.3e-54 208.8
Lsi06g01513 . 25 172 Response Regulator Gene Family AT1G10470 64.9 7.3e-46 181.0
Lsi03g01597 CCT 10 154 Response Regulator Gene Family AT1G10470 57.9 6.0e-40 161.4
Lsi09g00795 . 11 157 Response Regulator Gene Family AT1G10470 59.2 2.3e-39 159.5
Lsi04g01015 . 20 150 Response Regulator Gene Family AT1G10470 61.1 1.6e-37 153.3
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 11 175 Response Regulator Gene Family AT5G62920 64.2 3.7e-50 194.9
Lsi06g01513 . 22 168 Response Regulator Gene Family AT5G62920 71.4 1.1e-49 193.4
Lsi09g00795 . 11 151 Response Regulator Gene Family AT5G62920 58.9 5.9e-40 161.0
Lsi03g01597 CCT 10 156 Response Regulator Gene Family AT5G62920 55.1 2.3e-39 159.1
Lsi06g01513 . 30 167 Response Regulator Gene Family AT1G19050 73.9 2.4e-50 195.7
Lsi04g00507 . 28 185 Response Regulator Gene Family AT1G19050 59.7 8.9e-45 177.2
Lsi03g01597 CCT 8 159 Response Regulator Gene Family AT1G19050 52.6 2.1e-38 156.0
Lsi09g00795 . 3 154 Response Regulator Gene Family AT1G19050 53.3 4.7e-38 154.8
Lsi04g01015 . 20 151 Response Regulator Gene Family AT1G19050 60.6 2.3e-37 152.5
Lsi03g01597 CCT 1 160 Response Regulator Gene Family AT2G41310 72.5 2.0e-58 222.6
Lsi09g00795 . 1 153 Response Regulator Gene Family AT2G41310 64.9 2.9e-49 192.2
Lsi04g00507 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.4e-42 168.7
Lsi06g01513 . 30 164 Response Regulator Gene Family AT2G41310 61.7 2.9e-41 165.6
Lsi04g01015 . 20 151 Response Regulator Gene Family AT2G41310 55.9 1.2e-39 160.2
Lsi03g01597 CCT 1 158 Response Regulator Gene Family AT3G57040 77.8 4.5e-61 231.5
Lsi09g00795 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Lsi04g00507 . 25 158 Response Regulator Gene Family AT3G57040 60.1 5.0e-44 174.9
Lsi06g01513 . 29 164 Response Regulator Gene Family AT3G57040 61.1 1.8e-41 166.4
Lsi04g01015 . 18 151 Response Regulator Gene Family AT3G57040 56.4 6.3e-39 157.9
Lsi06g01513 . 17 187 Response Regulator Gene Family AT1G74890 68.0 2.1e-54 209.1
Lsi04g00507 . 25 184 Response Regulator Gene Family AT1G74890 60.5 7.2e-47 184.1
Lsi09g00795 . 11 146 Response Regulator Gene Family AT1G74890 60.3 7.3e-39 157.5
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G74890 54.4 1.2e-38 156.8
Lsi04g01015 . 12 147 Response Regulator Gene Family AT1G74890 58.1 4.0e-37 151.8
Lsi04g01015 . 20 152 Response Regulator Gene Family AT2G40670 70.1 2.6e-47 185.3
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT2G40670 55.3 2.4e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT2G40670 56.2 1.2e-39 159.8
Lsi06g01513 . 33 165 Response Regulator Gene Family AT2G40670 60.3 6.4e-38 154.1
Lsi04g01015 . 20 152 Response Regulator Gene Family AT3G56380 71.6 1.3e-48 189.5
Lsi06g01513 . 18 165 Response Regulator Gene Family AT3G56380 57.0 2.2e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT3G56380 54.1 4.9e-40 161.0
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT3G56380 53.9 1.9e-39 159.1
Lsi09g00795 . 11 154 Response Regulator Gene Family AT3G56380 55.2 3.0e-37 151.8
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi01g01374 . 38 185 Response Regulator Gene Family AT5G60100 60.9 6.4e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004701 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 6 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25548 PF18117 EDS1_EP 1.20E-52 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01513 Lsi_Chr06 FPKM 3.568233 4.501131 420.262299 410.50589 1.700682 1.219788 1.205293 4.115418 3.909595 3.076657