Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01514 ATGCTCCAAATTCTTCGTAGAAAAGCTAAGAATCAATATAGTTGGATAGGATTTTCCGGCATTCCTAAGACACTACGGCAACTCAAGGAAAAATCTCTTGCTCTTCTAACACAGAATTTTGTCAAGCTCTTTGTTTGCTCTAACGCACATGTGATTTCACTTGATGAAGCTGCAAAGTTACTGTTAGGTGATGCACAAAGTGTATCGATAATGAGAAGCAAAATCAGACGCCTTTACGATATCGCAAATGTGTTAGCAGCAATTCATCTTATTGAAAAGACGCAAACCGTTGATACTAGAAAGCCTGCATTCAGGTGGTTAGGATTCAGAGGTAAAGTCGAGAATTGTCGTGCAGGCAAACCGGTGGAATCGAATAAAAGGAGTTTTGGAACTGATATAACTAACATCAACTTGAAGAGAAACAGATTGGCAAATTCATTTGATCTGAATAAGAGCCCCAATTCCCAGAATCAAAAGCCTGTGCAGCTTGAGGGTTGTAGGGTTGAAGTAGATGGGGGCGAATTAGAGTGCGATCCAAATTCTAAGAGCTTCAAATTTGGACCCTTTTCTCCCAGCTCTAGACTGGAAGTTGGAGCACCAAAAAATGAAGCGAAACAGGGTCGTAATAACTGGGTGAGCCTTGCCTCAACTTACCATCCTCAGTATCAGAACCAAGCTTTAAAAGAATTATTCTCCCATTACAAGGAAGCCTGGAAGTTATGGTACTCTCAAACTGTGAACAGATCATCAATACAAATCCCTGAAGAATAA 771 40.47 MLQILRRKAKNQYSWIGFSGIPKTLRQLKEKSLALLTQNFVKLFVCSNAHVISLDEAAKLLLGDAQSVSIMRSKIRRLYDIANVLAAIHLIEKTQTVDTRKPAFRWLGFRGKVENCRAGKPVESNKRSFGTDITNINLKRNRLANSFDLNKSPNSQNQKPVQLEGCRVEVDGGELECDPNSKSFKFGPFSPSSRLEVGAPKNEAKQGRNNWVSLASTYHPQYQNQALKELFSHYKEAWKLWYSQTVNRSSIQIPEE 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25572238 25574434 + Lsi06G015140.1 Lsi06g01514 666244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01514 256 PANTHER TRANSCRIPTION FACTOR E2F 29 243 IPR015633 GO:0000978|GO:0006357
Lsi06g01514 256 PANTHER TRANSCRIPTION FACTOR E2F 3 30 IPR015633 GO:0000978|GO:0006357
Lsi06g01514 256 Gene3D - 24 110 IPR036388 -
Lsi06g01514 256 SUPERFAMILY Winged helix DNA-binding domain 30 109 IPR036390 -
Lsi06g01514 256 SMART E2F_TDP_2 28 108 IPR003316 GO:0005667|GO:0006355
Lsi06g01514 256 Pfam E2F/DP family winged-helix DNA-binding domain 29 108 IPR003316 GO:0005667|GO:0006355
Lsi06g01514 256 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 29 243 - -
Lsi06g01514 256 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 3 30 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00346 Lsi06g01514 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01514 Lsi-Chr6:25572238 Lsi01g01191 Lsi-Chr1:10116350 2.62E-06 dispersed
Lsi02g00346 Lsi-Chr2:2942389 Lsi06g01514 Lsi-Chr6:25572238 1.85E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25549 PF02319 E2F_TDP 6.10E-20 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01514 K09391 - csv:101210753 333.183