Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01516 ATGGTGATTCCTATTCCCACCCGGCAGCTATTCATCGACGGCGAGTGGAGGGAACCGGTTCTCAAGAAACGAATCCCCGTCGTCAACCCCGCTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTGGAGTTGGCAGTTGATGCTGCCCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCAGGGGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGATGATGTTGCTGGCTGCTTCGAATACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAGCTCCCGTTTCTGTTCCCATGGATACATTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATACTGAAGCCATCAGAACTGGCATCTGTTACCTCCTTGGAACTGGGCAAAATCTGTAAAGATGTTGGTCTTCCATCTGGTGTTTTGAATATTCTGACAGGATATGGCCCTGAAGCTGGTGCTCCTCTAGCGTCTCATCCTCATGTTGACAAGATTGCATTCACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCCCAACTTGTCAAGCCTGTAACCATGGAACTTGGTGGAAAAAGTCCGATTGTTGTTTTTGATGATGTCGACCTGGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAAGCTCGTGCAATGGTGCCAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGCGTGAAGGTGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAGTTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGTGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGATTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTGACTGTAAAGCAGGTTACTCAATATATATCCGATGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 45.77 MVIPIPTRQLFIDGEWREPVLKKRIPVVNPATEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSYVLKEPIGVVGLITPWNYPLLMSAWKVAPALAAGCAAILKPSELASVTSLELGKICKDVGLPSGVLNILTGYGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDKLVQWCQNIKISDPFEEGCRLGPVVSAGQYEKVLKFVSTAEREGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWINCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25587178 25592795 - Lsi06G015160.1 Lsi06g01516 666246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01516 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Lsi06g01516 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Lsi06g01516 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Lsi06g01516 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Lsi06g01516 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Lsi06g01516 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Lsi06g01516 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Lsi06g01516 503 CDD ALDH_F10_BADH 27 487 - -
Lsi06g01516 503 SUPERFAMILY ALDH-like 4 489 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01516 K00130 betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8] - csv:101213657 967.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01516 Lsi-Chr6:25587178 Lsi06g01544 Lsi-Chr6:25796226 2.34E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00887 . 4 363 Aldehyde Dehydrogenase Gene Family AT3G24503 72.6 2.4e-152 535.8
Lsi06g01544 . 73 538 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 5.1e-147 518.1
Lsi06g01544 . 1 538 Aldehyde Dehydrogenase Gene Family AT3G48000 74.2 4.5e-242 833.9
Lsi11g00444 . 3 570 Aldehyde Dehydrogenase Gene Family AT3G48000 64.8 9.2e-211 729.9
Lsi06g00887 . 19 362 Aldehyde Dehydrogenase Gene Family AT3G48000 55.2 4.6e-109 392.1
Lsi06g01544 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 70.2 7.6e-157 550.4
Lsi11g00444 . 3 424 Aldehyde Dehydrogenase Gene Family AT1G23800 61.8 1.8e-137 486.1
Lsi06g00887 . 19 347 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 3.1e-102 369.0
Lsi04g02400 . 66 543 Aldehyde Dehydrogenase Gene Family AT4G34240 64.2 9.9e-181 630.2
Lsi04g02401 . 15 445 Aldehyde Dehydrogenase Gene Family AT4G34240 55.7 3.0e-145 512.3
Lsi04g02400 . 131 541 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 2.3e-177 618.6
Lsi04g02401 . 75 443 Aldehyde Dehydrogenase Gene Family AT1G44170 63.0 4.8e-146 514.6
Lsi07g00222 . 89 503 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 5.7e-115 411.4
Lsi07g00222 . 29 504 Aldehyde Dehydrogenase Gene Family AT4G36250 62.2 4.3e-183 637.9
Lsi10g01510 . 37 526 Aldehyde Dehydrogenase Gene Family AT1G79440 70.2 2.2e-204 708.8
Lsi03g00690 . 12 485 Aldehyde Dehydrogenase Gene Family AT2G14170 80.1 8.3e-229 790.0
Lsi01g00821 . 177 688 Aldehyde Dehydrogenase Gene Family AT2G14170 61.4 2.2e-181 632.5
Lsi06g01516 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 82.0 7.6e-252 866.3
Lsi06g01516 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 82.5 1.7e-254 875.2
Lsi11g00399 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 2.2e-267 917.9
Lsi02g00309 . 21 549 Aldehyde Dehydrogenase Gene Family AT5G62530 75.7 2.4e-246 848.2
Lsi09g01486 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.3e-277 952.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01516 Lsi_Chr06 FPKM 1.780499 1.613578 0.552875 0.4008 6.321868 6.935178 7.990411 0.0 0.0 0.0