Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01521 ATGGCTTTCTTTCCTCCTCCCGCTTTCCTTTTCGTAATTTTGTTATCTGTTTCATTCTCAGTTGAATCGAAGCTTTCTCTTGATTATTACCAGAAAACTTGCCCCGATTTCGCCAGAATCGTTCGTGAAACCGTCACTAAGAAGGTGGTTTCTAGTCCAACCACCACCGCCGCAACTATGCGCCTCTTCTTCAACGATTGTTTAGTTGGAGGCTGCGATGGCTCTGTTCTCGTTGCTTCTAACACATTCAACCACGCCGAGCGCGATGCTGAAATCAACCTTTCTCTTCCAGGAGACGCGTTCGACGTCGTCACTCGATCGAAGATCACCTTAGAGCTTTCTTGCCCCGGGATCGTCTCTTGTTCCGACGTATTAGCACAAGCGACTCGCGATCTCATCACGATTTCAGGCGGACCGTCGTACAATGTTCGATTAGGGCGAAAAGACAGCCTGGTATCGAAATCTTCCGAAGTGGAAGGCAACATTCCAAAAGCGAATCAATCAGTTGACGAGATGATTAAGCTATTCACATCGAAAGGATTCACGATTCAAGAAATGGTAGCGTTGTACGGTGGACGAACAGTCGGATTCTCAAATTGCAAGGAATTCAGCGATCGGATCTTCAAGTTTAGCAAGACAACACCAACAGATCCAGAGATTCATCCGAAGTTTGCAGAGGCTTTGAAGAAGACTTGTGAAGGATATGAGAAGAATCCGGGAATGTCGGCTTACAGCGACGCCGTAACACCGGGGAAATTCGATAATGTGTATTACCAGAATCTGTTGAGAGGAATGGGGCTATCGGCGTCGGATCATGCATTGGCGAAGGATCCGAGAACGAGGAAGTTCGTGGAGATGTACGCCGGAAATCAGGCGTTGTTCTTCAAGGATTTTGCACACGCCATGGAGAAGATGAGCGTCCATGAAGTGAAAACTGGTGGGAAAGGAGAAGTGAGGAGGAAATGCGATGTGTTCAATGAAATCCGTACTTGA 993 47.23 MAFFPPPAFLFVILLSVSFSVESKLSLDYYQKTCPDFARIVRETVTKKVVSSPTTTAATMRLFFNDCLVGGCDGSVLVASNTFNHAERDAEINLSLPGDAFDVVTRSKITLELSCPGIVSCSDVLAQATRDLITISGGPSYNVRLGRKDSLVSKSSEVEGNIPKANQSVDEMIKLFTSKGFTIQEMVALYGGRTVGFSNCKEFSDRIFKFSKTTPTDPEIHPKFAEALKKTCEGYEKNPGMSAYSDAVTPGKFDNVYYQNLLRGMGLSASDHALAKDPRTRKFVEMYAGNQALFFKDFAHAMEKMSVHEVKTGGKGEVRRKCDVFNEIRT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25632662 25633654 - Lsi06G015210.1 Lsi06g01521 666251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01521 330 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PANTHER PEROXIDASE 41 9 329 - -
Lsi06g01521 330 Pfam Peroxidase 41 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 Gene3D Peroxidase, domain 2 163 305 - -
Lsi06g01521 330 PANTHER - 9 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g01521 330 Gene3D - 28 326 - -
Lsi06g01521 330 CDD secretory_peroxidase 24 325 IPR033905 GO:0004601|GO:0042744
Lsi06g01521 330 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01539 Lsi-Chr2:21230961 Lsi06g01521 Lsi-Chr6:25632662 8.53E-126 dispersed
Lsi06g01521 Lsi-Chr6:25632662 Lsi05g01275 Lsi-Chr5:20482664 1.28E-76 dispersed
Lsi02g00351 Lsi-Chr2:3006170 Lsi06g01521 Lsi-Chr6:25632662 5.42E-162 wgd
Lsi03g01427 Lsi-Chr3:25241352 Lsi06g01521 Lsi-Chr6:25632662 3.48E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01521 K00430 - csv:101213178 569.696