Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01525 ATGTTAGAGGTGTTGATGAAATATCATGCATTTATGTTAAGGAATGACGAGAATGATGGGAAAGAAATCTATTCTTCCGGGCCGAGATGCTTTCAATTGAAGTTCGTAACTGATATTTCTCTCCCGGTATTTACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAACTTGATGGTGGCTTTGGTTGACACCTTAAGTGGGGAAGTTGTTGGCGCTGGGCCTCAATCCTCAGCCAAAGTGGAAATTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAGGTGATAGTTACACTATAGAGGAGTTTAAGAATAACATTGTAAGAGAGAGGGAAGGAAAGAAACCACTTCTTACAGGAGATACATTTGTGAGTCTCAAAGATGGCATTGGTTTGGTAGGTGAGATTTCTTTCACTGACAATTCAAGCTGGACTAGAAGCCGTCGGTTCAGGCTCGGTGCAAGAATTATAGATGACAATGATGGAACGAGAATACTGGAAGCAAAGACTGCATCATTTGTGGTTAGAGATCACCGTGGAGAATTGTACAAAAAGCACCACCCTCCATTTCTGCAGGATGAAGTATGGAGATTGCAGAAAATTAGCAAGGATGGAGCCTATCATAAGCGCCTAAGTCAAGAAAAAATCGAGACGGTGAAAGATTTCCTAACTCAGCTTTATGTACAACCTTCAAGGCTTCGTAATATTCTTGGCCCTGGTATGTCTACCAAAATGTGGGAAGCTACGATTGAGCATGCACAGACATGTGTGCTCGATAGGAAGATTTACGTGTACAAACCTCGTGATTGGGAACAGAAAAACGGAGTGGTCTTCAATGTTGCTGATGCTCACCACTTGGTTATCTCTGCATACAAACACTGGGAAGAAGTTGACTCTATTGATGATGAAACTTCTCTTGTAGGTGGCTCTTCTCACCCACTCAGTTTCCTTTACACCCCCAGTTCACCCATTGAGGACCATTCTTATGGTGGCAAGTACTTGGCTTCTCCAAAATTTAGTGGCTTTGATTTCACACCATCAAATGCCTATTCTTCTGACATAATTTCATCGATGGGTTCTATTGGGAATCCTAGCGGCTTGGACGATCATGCTTTGCAGGGTTTTGATTCTATGGTTGTAAGATATGATCAGATGCCAAGTTCCCCAAACTTTGCCAGCTCTTCTCTGATCTGCGATTCCGAGCCACTAAACTCATCTTTCTTTGATGTGGATCATACACAAGTTTTAGAATCACGAGCAATCACAACAACTCTTCAAGGTGGCTCCTCATCATGTGGTGCTCAAATGAGATGGGCTAAGGTATATGGTGTGCTAAAATGGTACTTTTTGTTGAGATTTGTAATTAGGAGAAACAAACGCGGTTTCGAGAGATACAAAGGTGTACAGGGACGTGGAAAGGAAAAACTGGACTATGGTTGA 1434 42.68 MLEVLMKYHAFMLRNDENDGKEIYSSGPRCFQLKFVTDISLPVFTGARIEGRDGSNLMVALVDTLSGEVVGAGPQSSAKVEIVVLEGDFEGGGDSYTIEEFKNNIVREREGKKPLLTGDTFVSLKDGIGLVGEISFTDNSSWTRSRRFRLGARIIDDNDGTRILEAKTASFVVRDHRGELYKKHHPPFLQDEVWRLQKISKDGAYHKRLSQEKIETVKDFLTQLYVQPSRLRNILGPGMSTKMWEATIEHAQTCVLDRKIYVYKPRDWEQKNGVVFNVADAHHLVISAYKHWEEVDSIDDETSLVGGSSHPLSFLYTPSSPIEDHSYGGKYLASPKFSGFDFTPSNAYSSDIISSMGSIGNPSGLDDHALQGFDSMVVRYDQMPSSPNFASSSLICDSEPLNSSFFDVDHTQVLESRAITTTLQGGSSSCGAQMRWAKVYGVLKWYFLLRFVIRRNKRGFERYKGVQGRGKEKLDYG 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25649722 25652521 + Lsi06G015250.1 Lsi06g01525 666255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01525 477 Pfam Calmodulin binding protein-like N-terminal domain 31 176 IPR046831 -
Lsi06g01525 477 Pfam Calmodulin binding protein central domain 189 254 IPR046830 -
Lsi06g01525 477 PANTHER CALMODULIN-BINDING PROTEIN 60 A 5 455 - -
Lsi06g01525 477 PANTHER OS02G0177800 PROTEIN 5 455 IPR012416 GO:0005516
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00080 Lsi-Chr6:751411 Lsi06g01525 Lsi-Chr6:25649722 2.35E-17 dispersed
Lsi06g01124 Lsi-Chr6:21513073 Lsi06g01525 Lsi-Chr6:25649722 6.67E-89 dispersed
Lsi06g01525 Lsi-Chr6:25649722 Lsi11g00615 Lsi-Chr11:6546482 2.97E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01525 - - csv:101211405 821.617