Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01531 ATGTGGGGCTTCCGTCGCCACTGCTGCCTCTTTGCCGCTCGCTTGCCGGAGCCCAGATCGTCGCCGCTTGCAGGAGCCAAGCCTTGTTCGAGCTTCCGTAGCTGGCAACTTGCCCCTTCTGTGTTCAGTCCGTCGCTCTGTAGTACGACCACGACCTTCAGAATCAGAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCCGCTGCTGCTGCTACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGATGACAAACCCGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTGAATGCACAAAATCTAAGGTTCCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCACTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGATGAACCAGATCCTCGTAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTGTAA 603 50.41 MWGFRRHCCLFAARLPEPRSSPLAGAKPCSSFRSWQLAPSVFSPSLCSTTTTFRIRAMFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25703886 25708508 + Lsi06G015310.1 Lsi06g01531 666261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01531 200 Gene3D - 89 189 IPR038340 -
Lsi06g01531 200 SUPERFAMILY Ribosomal protein L29 (L29p) 116 183 IPR036049 GO:0003735|GO:0005840|GO:0006412
Lsi06g01531 200 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 94 180 IPR010729 GO:0003735|GO:0005761|GO:0006412
Lsi06g01531 200 TIGRFAM L29: ribosomal protein uL29 120 180 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lsi06g01531 200 CDD Ribosomal_L29_HIP 119 180 - -
Lsi06g01531 200 PANTHER RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED 58 200 IPR010729 GO:0003735|GO:0005761|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01531 K17428 MRPL47, NCM1; large subunit ribosomal protein L47 - csv:101210906 258.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g703 . . . . . Bpe13g00257 Bma06g00204 . . . Cma10g00141 Cma11g00108 Car10g00133 Car11g00107 . . . Bhi02g00411 . . . Hepe09g0182 . . . . . . . . . . . . . . . . . . . . Bda14g00820 . . . . . . . . . . . . Cpe18g00832 . . . . . . . . . . . . . . Lsi06g01531 Csa01g00171 Chy02g02560 Cme02g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011635 2 2 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01531 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0