Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01533 ATGAAAACCCGAACTGCCCGATCTGCCCGGGACTGCCCGGACTCGGCTCGCTACCAAGTACCAAGTACACATTTCCTTTCTGCCGTCTGGCTTTCTCTTTCTCTTCTCCCACAAACTCCCAACCTCCCCGTTGAAAGGCGGCTCGAAATCTTTAATCATCTCTTGGCGTGTGAATTCGTGGTACGCCGGTGGAATTTTCCGGATAATCCTTCTTTATCTCTATCGGGATATGATATCAGGGCAGTGTTTTCTATTGATCTAGGGTTTCTTGGTAAGCCGATAGCTTTGAATTGGCTTTCCTCTGTCGAATTAGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGCTGGAATTGGGGAAAATGCTAGGCTATGCATGGGCGTCGAGGTGAGGACTGGAAACGGACTCGGCACATGTGGACAGTCCCCACACCTGATCGTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCTAATTCGTTTTGCAAGGTAATATTTTCTCTTCGTCGTTCAGCTTTCTTTGTGGTTGTTTTAGCTCGTCCTTGCGACAAAAAAAGCATTCGCTGTTGTAGGCGAAATGGAATGGTTGAAGAAATTATTCGTTGCGGTCAATGTTGGACGGAGGAATTGTTTTTAGTTCTTATGGTGTTCATTCTCTCTATGGAGGAATTTGGTGAATTGGCTTTAAAGCATTGGAGGAGGTCTGGAAAATTGATCCTGGCATTGGATGAGCGGTCTGTAGGCTTCAGAAAAGGTTTCATGTTCAGTACAAAAACTATATGGCTATTTGCTGCTTGGCATTACCGAATGCTATTGGGATGGGGTGTTATGTCGTTGAGACCAGCAAATTACTTAGCTTTTGTTTTTTTCCCATCTCCGTCAATGGATGTTTGTTACCTAGTCCCAAGGTGTGTTTGCTTCACCAGGGAAAGATGTTTACGAGACTTGTTTCAGGTCTTTTGGGGGTTTCTTAATTACCTTGCTGTTTTAAAAATAGATTTGTATATGGGGACTGAGAGTTTTTCCCCTCCTGGTTTTTTTCTTGGAGATGTGAATGAATACATCGCAGTTATCTTTGACAACTCACTATTCTCTACTCTCTTTGAACAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTGGCGGCTGGTAAGGAGAATAAATTGAAGTTAGGTGTGAATTGGCTTTATCGATCTTTTGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTCCTTCCGAAGGACGTTGAACTTCCATCAGGGATTTCATCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACCGATCAGGACTATATTAATGAACGTCAGGAAGAAGTAGATCAATTGTTATATAAGACAAGATTAGAAATGCATGCTTCAGTGCAACCTGGTGGTCGATCACCGAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCGGAGATTGCAAAAGTTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTGGAGAAATTGGTGCAGCTTATGCTGACAGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTTAAGGGTTTACCTGTACTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGTGACAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTACCTGTAAACCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGTTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAATATTAATGATGCGAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCATCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCGCAGGATGACAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCTGCATCAGCAAGTATTAACTCAAAAGATGGTTCTTCCAGAAATCCGGGTGTTTGTGGCACAACTGATCTTGCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCAAGAAGCTCAACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTCCTGTTCTCTCTGGGGGTCAACGGGATGTAGGGTCGGGGAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAGTCTGGAATGACCTTTGAAAAGGCATCTGATGGTCCTGTTGGTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTTTCGGAGAAACATGATCAACTTGATCACAGTAAGAGTGATACATGTCAACCTAACATTACTGGAGATGTGAAAGCGGAGTCCTGGCAGAATAATGATGTAAAGGATACGGTGATTGGTGCTGATGATGGTGATGGACCTCCTGCTGCTGTAAATGGTGATGAGCGCTGTCGGGCTGCAGAAGATGCAACAGTTTCAAAGGCTACTCCGTCATCATTAGCGAATGATCATAAGAATGGAAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAAGCTAGTATGCCTACCTCACTCACGGATAATGTTGGAATGAATTTACTCGCTAGTGTAGCAGCCGTCGAGATGTCGAAGTCTGATTTTGTTTTGCCTTCAGATACTCAAGGAAATATGACTGCAGTGGACCGCTCTTCTAGAGGCAGTGATTGTAAAGTCAAAGCATCTTGTCCTGAAGAGGGTGCTAGAGAGAACATGCTGTCAAATGATGCTATGGATGTTACTGAGCAGGGCGTGATCACCAGTTCCTTTGGAGGTAAAAATGTGGATGGAAGGTCTGCTTCGCAATCTGAAGAGAAACCGGTTGGAGATCTGAATGGTCATTCAAAATCTTCTGGTGTAAACTTGCAACAAACTAATGTGCCGTTGGCTGATGGGTGTATGAAAATGAACGAGGTTGGAGGCCCTGCCTCTCCCGCTAGGGTACCAGAGAAGGGCTTTGAGATCAAGGGGGCTAAACCGGTCAAGGACAGAAAGACAGCTGATGTAGTAGATGGAGATAGCAGCCCAGAATCGAAACCAAAACCAAGCAGTTCTTTTCCTGATGGTGGCATGGTTGGTAATGGTATCTCGACTCGGGAAGTTGAAATGGATGTTCTTGATGAGCCCTTGCATCGGCGGCAAGACATTGATGGCAATACGAATACTAGACTGAATGGTATTAGTACAGCAGATCAAAGGTTATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAACGATGGATTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGTAAATGCAAGTGGGATGAAGGGCGAGAAGGATGATGAAACCTCAGCTGATGTCAAACTTGAAAAACATCAAAGTGATTTAGATCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGGCTTGTGTTCAGCTACCAACCACGAGGATGAGCATGTGGAGGAGAATTTGGAATCTAAAGAGAATACAGAGAGAATTGGAGGACAAACACATCACGGGCAATCTATTATTTCTACTGTCCAAGAAACCGAGCAGCCTAAGCCATCCAAAAGAGCCAAATTAGCTGGTGTTGAAGCAGAGGAGGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAACGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTTACACCGTCTGGTTGTTTGTCAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGGCAAACAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAGGAGGTTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCCACCAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTCTTGCAACCACTCCACTTGCTGATGTTGCAGTCAGTAAAATTTCTCGACCCCCACTGGATATTGACTTAAATGTTCCTGATGAAAGGATTCTCGAGGATATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGTCTGACCTGACTAATAATTGTGATCTGGCACATGGTATAGGGGCCGCACATGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAGTTGTCGTAGAATAGATGCTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTCCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGGCCACTACTGAACCATCAATATTTCCTCAGCATGCCAGAGGCAGTATGCCATCCCAGCCATCTGTTTCTGGCCTTTGGATGAACAGTGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCTGATAGAGCAGAGCAGTCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCAGTGCCCTTTCCTTCTGCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTTACTCTACCTTCAGCCACGTTTTCAGGTAATGCAACAGCATACGTTGATTCAACATCTGGTAGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAGTTTTTAGGTCCTCCTGGTACAGTTTCAACGCCTTATCCAAGACCTTATGTTGTCAGTCATTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCGGGTCCTGTAGTTCCAGACATTGAAGGAAGAGAGGAATCATCATCCTTGGTACCAAGGCAACTATCTGTTGCCGGTTCACAGGCCACTGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATAGGCATAGTGAAGAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTAG 5880 44.37 MKTRTARSARDCPDSARYQVPSTHFLSAVWLSLSLLPQTPNLPVERRLEIFNHLLACEFVVRRWNFPDNPSLSLSGYDIRAVFSIDLGFLGKPIALNWLSSVELGLGLMVLVRREGGIEAGIGENARLCMGVEVRTGNGLGTCGQSPHLIVEADGSSSSSSSAPNSFCKVIFSLRRSAFFVVVLARPCDKKSIRCCRRNGMVEEIIRCGQCWTEELFLVLMVFILSMEEFGELALKHWRRSGKLILALDERSVGFRKGFMFSTKTIWLFAAWHYRMLLGWGVMSLRPANYLAFVFFPSPSMDVCYLVPRCVCFTRERCLRDLFQVFWGFLNYLAVLKIDLYMGTESFSPPGFFLGDVNEYIAVIFDNSLFSTLFEQGGRRISVGDCALFKPPQDSPPFIGIIRWLAAGKENKLKLGVNWLYRSFELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKVAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPVGEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSEKHDQLDHSKSDTCQPNITGDVKAESWQNNDVKDTVIGADDGDGPPAAVNGDERCRAAEDATVSKATPSSLANDHKNGKLHEASFSSINALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNMTAVDRSSRGSDCKVKASCPEEGARENMLSNDAMDVTEQGVITSSFGGKNVDGRSASQSEEKPVGDLNGHSKSSGVNLQQTNVPLADGCMKMNEVGGPASPARVPEKGFEIKGAKPVKDRKTADVVDGDSSPESKPKPSSSFPDGGMVGNGISTREVEMDVLDEPLHRRQDIDGNTNTRLNGISTADQRLSSKLNSDSAKLRNDGLLQASGSSSDLVSVNASGMKGEKDDETSADVKLEKHQSDLDPMPSESRGLGGLCSATNHEDEHVEENLESKENTERIGGQTHHGQSIISTVQETEQPKPSKRAKLAGVEAEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLSTVQLISPLPLPVSNVANNIPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVAVSKISRPPLDIDLNVPDERILEDMNAQMSTQEVASKSDLTNNCDLAHGIGAAHGRCSGGLDLDLNRVDDAPDPSNFSLNSCRRIDAPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARGSMPSQPSVSGLWMNSAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSATFQYPVLSFGNSFTLPSATFSGNATAYVDSTSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGREESSSLVPRQLSVAGSQATAEEHMRVYQPAIGIVKRKEPEGGWDGYKQSSW 1959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25709545 25717183 + Lsi06G015330.1 Lsi06g01533 666263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01533 1959 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 371 1959 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1440 1454 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1344 1358 - -
Lsi06g01533 1959 Pfam TFIIS helical bundle-like domain 693 742 IPR017923 -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1422 1439 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 520 572 - -
Lsi06g01533 1959 Gene3D - 362 591 IPR043151 -
Lsi06g01533 1959 CDD TFIIS_I 667 743 - -
Lsi06g01533 1959 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 608 746 IPR035441 -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 525 554 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1208 1224 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1401 1421 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1344 1469 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1011 1033 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1874 1890 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1362 1385 - -
Lsi06g01533 1959 ProSiteProfiles BAH domain profile. 379 494 IPR001025 GO:0003682
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 924 949 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 748 1075 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1872 1927 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 888 907 - -
Lsi06g01533 1959 ProSiteProfiles TFIIS N-terminal domain profile. 659 745 IPR017923 -
Lsi06g01533 1959 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 371 1959 - -
Lsi06g01533 1959 SMART BAH_4 379 494 IPR001025 GO:0003682
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 971 999 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 555 572 - -
Lsi06g01533 1959 Pfam BAH domain 381 488 IPR001025 GO:0003682
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 749 876 - -
Lsi06g01533 1959 SMART TFS2_5 665 744 IPR003617 GO:0005634
Lsi06g01533 1959 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 647 756 IPR035441 -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1181 1289 - -
Lsi06g01533 1959 MobiDBLite consensus disorder prediction 1246 1269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01533 - - - bhj:120071278 2956.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00258 Lsi-Chr3:3218276 Lsi06g01533 Lsi-Chr6:25709545 5.57E-08 transposed
Lsi09g00260 Lsi-Chr9:2713822 Lsi06g01533 Lsi-Chr6:25709545 7.71E-21 transposed
Lsi03g01422 Lsi-Chr3:25165388 Lsi06g01533 Lsi-Chr6:25709545 3.07E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25551 PF01426 BAH 1.90E-07 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01533 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi06g01533 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.088158 0.0 0.0