Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01534 ATGGCTTCCAGTGCTTCGAGGTTCATCAAATGCGTCACGGTTGGAGATGGGGCTGTTGGGAAGACCTGCATGCTAATATGCTATACTAGCAACAAATTCCCCACTTTCCATCTTCTGATCTTCTCTGCTGCTATTGATGTATTTTCATTCTGTTTATCTCATGATTTTGGGTTACAATTGTTCTCTTTCCTTTGTGACTTTAATGTTTGTTTTCTTGGAGAAAACATAATCAGTTGTCTTTATCAGGATTACATTCCCACTGTGTTCGACAACTTCAGTGCAAATGTGGTGGTTGAAGGCACCACTGTCAATTTAGGCCTCTGGGATACAGCCGGTCAAGAAGATTACAATAGGTTAAGGCCATTGAGCTACAGAGGAGCTGATGTTTTCATCCTTGCCTTTTCGTTAGTTAGCCGAGCGAGTTACGAAAATGTACTTAAGAAGTGGATTCCCGAGCTTCAACATTATGCACCTGGAGTCCCGGTGGTGTTGGTTGGCACCAAATTGGGAAAGTCCTTGACTAGAGAAACCCCTGTTATCTTTGTTTGGAGTGCTTCCAAAGGGCGGGACCTTGTCGTTATAGCTCAGAGTTCAGACAAAGGTCCCGATCTTCGAGAGGACAAATTCTATTTGGCTGATCACCCCGGATTGGTTCCCGTAACCACTTCGCAGGGTGAGGAACTCCGTAAACAGATCGGTGCCACGTATTACGTCGAATGCAGCTCAAAAACCCAGCAGAAATGTGTTTTGTGGAAGAAACCTTACAAGGCAAAGTTGAGAGCAGCTTTATATAACAAAACAACAGAGGGTTGTTTGGAGAAAGTGAAGCGAAGAAGCTAG 840 44.17 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTFHLLIFSAAIDVFSFCLSHDFGLQLFSFLCDFNVCFLGENIISCLYQDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTKLGKSLTRETPVIFVWSASKGRDLVVIAQSSDKGPDLREDKFYLADHPGLVPVTTSQGEELRKQIGATYYVECSSKTQQKCVLWKKPYKAKLRAALYNKTTEGCLEKVKRRS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25717515 25720501 - Lsi06G015340.1 Lsi06g01534 666264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01534 279 SMART ras_sub_4 64 198 - -
Lsi06g01534 279 ProSiteProfiles small GTPase Ras family profile. 4 279 IPR001806 GO:0003924|GO:0005525
Lsi06g01534 279 SMART rho_sub_3 11 265 IPR001806 GO:0003924|GO:0005525
Lsi06g01534 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 246 IPR027417 -
Lsi06g01534 279 ProSiteProfiles small GTPase Rho family profile. 2 262 - -
Lsi06g01534 279 PRINTS Transforming protein P21 ras signature 158 171 - -
Lsi06g01534 279 PRINTS Transforming protein P21 ras signature 9 30 - -
Lsi06g01534 279 PRINTS Transforming protein P21 ras signature 96 118 - -
Lsi06g01534 279 CDD Rop_like 8 246 - -
Lsi06g01534 279 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED 81 248 - -
Lsi06g01534 279 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED 1 38 - -
Lsi06g01534 279 PANTHER RHO FAMILY GTPASE 81 248 IPR003578 GO:0005525|GO:0007264
Lsi06g01534 279 PANTHER RHO FAMILY GTPASE 1 38 IPR003578 GO:0005525|GO:0007264
Lsi06g01534 279 ProSiteProfiles small GTPase Rab1 family profile. 4 279 - -
Lsi06g01534 279 TIGRFAM small_GTP: small GTP-binding protein domain 84 172 IPR005225 GO:0005525
Lsi06g01534 279 Pfam Ras family 82 247 IPR001806 GO:0003924|GO:0005525
Lsi06g01534 279 Pfam Ras family 10 35 IPR001806 GO:0003924|GO:0005525
Lsi06g01534 279 SMART rab_sub_5 9 257 - -
Lsi06g01534 279 Gene3D - 7 269 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01534 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csin:114317467 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01534 Lsi-Chr6:25717515 Lsi10g00494 Lsi-Chr10:7102355 5.96E-94 dispersed
Lsi06g01534 Lsi-Chr6:25717515 Lsi11g00250 Lsi-Chr11:2550722 4.37E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g705 Blo04g00876 . . . . . . . . . Cma10g00140 Cma11g00107 Car10g00131 Car11g00106 Sed08g0145 . Cpe04g01544 Bhi02g00417 Tan09g2221 Cmetu02g0238 . Hepe09g0185 . . Cla06g01646 Cam06g1831 Cec06g1880 Cco06g1886 Clacu06g1790 Cmu06g1732 Cre06g2550 Cone2ag0888 Cone16ag0122 Cone13ag0128 Cone19ag0132 . . . . Blo13g00048 . . . . Bpe15g00483 . Bma08g00175 . Cmo10g00146 Cmo11g00109 . . . . . Cpe18g00834 . . . . . . . . . . . . . . Lsi06g01534 Csa01g00169 Chy02g02562 Cme02g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01534 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0