Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01540 ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGTTATCATCCACGGATATGTTGGATTTTCCTCATACACCGAGAACGGTTCCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAAAGATTCGGAAGTTTCATCCTCTAAATGCAGAGGGAGAAAAATTATAGTGGCAAATTTTCTCCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAACTTCAGTTTTGATGAGGATTCGATTCTGCTTCAGCTGAAGGATGGCTTCTCACCTGATGTAGATGTTATATATGTTGGATCGTTAAAGGTCGATGTCGATGTCCGAGAGCAAGATGAGGTTTCTCAGAAACTGCTGGAGGAATTCAACTGCGCACCGACTTTCATTCCTGCAAACCTTCAGAAACAGTTCTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTATCATGGATCTCGCTTTGATCGACATCTTTGGCAAGCGTATCTTTCAGTCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATCTGGAAGAAGATTATGTCTGGATTCATGATTACCACCTTATGGTTCTCCCTACTTTCTTGAGAAAACGCTACAGTCGAATTAAGCTCGGATTTTTCCTTCATAGTCTGTTTCCCTCCTCAGAAATCTATCGAACTCTCCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAACGCAGACCTAATTGGTTTCCATACATTTGATTATGCTCGACACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGCGGATATCTCACGCTCGAGTATTTTGGCCGTACAATATACATCAAGATTTTGCCTGTTGGAGTTCATATGGGTCGACTTGAATCTGCATTAAATCAACCGCACACTTCAATGAAGGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAGAGACTTATACTTGGTGTTGATGACATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTATGGAACAGCTATTGAAACAGCATCCAGAGTTGAGAGGCAATGTCGTTCTTGTGCAAATTCTAAATCCGGCACGGAGCAATGGGAATGACGTCCAGGAAGCAAAACGGGAAACTTATGAGATAACCAAAAGGATTAACAAGGTTTTCGGTTGTCCGGGATATGAACCTGTAATCTTGATTGATCATGCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCGTATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATGAACTCTTGGAAGTCTCTCCGGATTCACCTCGTACCAGCACGATTGTCGTGTCGGAATTTATAGGCTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCCTGGGATTTTGATGCTGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACCGGTATGTTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCGCAAGATTTGGAGCGAGCATGCCGAGAACACTACAGTAAACGTTGCTGGGGCATTGGTTTTGGTTTAGGTTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATCGAACACATTGGCTCTGCATATAGGAGCGCCTCTAGGAGGGCAATATTTTTGGATTACGACGGGACTGTGGTTTCCGAAACTTCGTTGGTTAAATCCCCATCGCCTGAAGTCATTTCTATCATCAACAACCTTTGCATGGATTCAAAGAACACCGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTTGGTTCATGGTTCGATTCGTGTAAGAATCTAGGTATTGCCGCTGAACATGGATACTACTTGAGGTGGAATAGGGACTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTTTGTTGGAAAAGGATTGCAGAACCTGTGATGAAATTATATACTGAGGCAACCGATGGCTCATACATAGAGACCAAGGACAGTGCGTTGGTATGGCACCATCAAGATGCTGACCCTTATTTCGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTAGTTGTTAAAAGAGGTCAGCAGATCGTCGAAGTTAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAACTCTAATAAAGCACCCGACTTTGTGTTGTGCATTGGAGATGATCGATCCGACGAAGATATGTTCGAGAGCATATCAAGCAGAAGCTATAGTTCATCCCTTGCTAGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCACCGACGTTTTGACCTTGCTTCAAAGCCTGGCCACCCCTTCTACCCGTAAACTGAGGCCGAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATGAAGATAATTGCTTGGATAGAGTAAGTTGGTTTGGTGGTGTAAATAACTCCTTTCACGACACTCGTTCTTCGCTTCTCCCGGATTCGAGAGTAGCCGAACAAGATCCATTGGAACCTAGGAATGCGAATCATGGGTCCCACCTTTATCCTGTGTCCGAAGCAGCGGATTATAATCCCCGCTTCCCTCCAAACAACAGCTCGAACGTCTTACCTGACTCTCTTCCTTGCGAAGCCGATAAATCCAATTCTTTGTTGCCGACCGCCAGGTGCGGTTGTTTCCGGTTATCTTGCTTTGGATCTCGCCGTGTGGCCACAGTCGGACCGTCGTGGTGGGAACGGATTAGGGCATCGCAGGTTCATAGCGAGGGGCGCTGGTGGGCGAGAGGCGTTAGGGCTCTTTTGAAGCTCCGAGAATGGTCGGAGATCGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTTAATCGGAATCGGAGTGGTGGTGGTGGAGCTGGTCTTAGGGCTGGGAAATTTCAATACGATCCTTTGAGTTACGCTATGAATTTCGATGAAGGTTCGAGGCAGATTGGAGAATTGGACGACGATATCGATGATTTCAATGGTTTTCGGAACTTCTCTGCTCGTTACGCTTCGATTCCGGCGCCGTTGAAGACTGGAGGAACCAAGGATGTTTCTGCCGTCGCGTAA 3252 44.59 MLSSSCLSLLELSSTDMLDFPHTPRTVPRVMTASGIFSDKDKDSEVSSSKCRGRKIIVANFLPLHAKKDPDSGKWNFSFDEDSILLQLKDGFSPDVDVIYVGSLKVDVDVREQDEVSQKLLEEFNCAPTFIPANLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSVNKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLESALNQPHTSMKVKEIKENLKGKRLILGVDDMDIFKGIGLKLLAMEQLLKQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGCPGYEPVILIDHAIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDELLEVSPDSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYVSSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLVKSPSPEVISIINNLCMDSKNTVFIVSGRGKDSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSPLAENFCWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSRSYSSSLASPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSFETRVLFEDDEDNCLDRVSWFGGVNNSFHDTRSSLLPDSRVAEQDPLEPRNANHGSHLYPVSEAADYNPRFPPNNSSNVLPDSLPCEADKSNSLLPTARCGCFRLSCFGSRRVATVGPSWWERIRASQVHSEGRWWARGVRALLKLREWSEIVAGPRWKTFIRRFNRNRSGGGGAGLRAGKFQYDPLSYAMNFDEGSRQIGELDDDIDDFNGFRNFSARYASIPAPLKTGGTKDVSAVA 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25744451 25753323 - Lsi06G015400.1 Lsi06g01540 666270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01540 1083 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0003824|GO:0005992
Lsi06g01540 1083 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824|GO:0005992
Lsi06g01540 1083 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 845 IPR001830 GO:0003824|GO:0005992
Lsi06g01540 1083 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 587 788 IPR006379 -
Lsi06g01540 1083 SUPERFAMILY HAD-like 586 834 IPR036412 -
Lsi06g01540 1083 TIGRFAM T6PP: trehalose-phosphatase 583 834 IPR003337 GO:0003824|GO:0005992
Lsi06g01540 1083 Gene3D Glycogen Phosphorylase B; 307 523 - -
Lsi06g01540 1083 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 845 - -
Lsi06g01540 1083 CDD GT20_TPS 54 539 IPR001830 GO:0003824|GO:0005992
Lsi06g01540 1083 CDD HAD_TPP 587 826 - -
Lsi06g01540 1083 Gene3D - 585 699 IPR023214 -
Lsi06g01540 1083 Gene3D - 715 844 IPR023214 -
Lsi06g01540 1083 Gene3D Glycogen Phosphorylase B; 46 306 - -
Lsi06g01540 1083 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01053 Lsi-Chr6:20757151 Lsi06g01540 Lsi-Chr6:25744451 1.51E-16 dispersed
Lsi06g01540 Lsi-Chr6:25744451 Lsi11g01715 Lsi-Chr11:25256976 3.73E-74 dispersed
Lsi08g01228 Lsi-Chr8:20735277 Lsi06g01540 Lsi-Chr6:25744451 2.34E-06 dispersed
Lsi01g00224 Lsi-Chr1:2036636 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
Lsi02g00848 Lsi-Chr2:7945172 Lsi06g01540 Lsi-Chr6:25744451 6.64E-113 transposed
Lsi04g01978 Lsi-Chr4:26807945 Lsi06g01540 Lsi-Chr6:25744451 1.17E-125 transposed
Lsi07g01179 Lsi-Chr7:17303864 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
Lsi11g01716 Lsi-Chr11:25258732 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
Lsi04g00531 Lsi-Chr4:4900865 Lsi06g01540 Lsi-Chr6:25744451 3.44E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01540 K16055 - csv:101209676 1647.1