Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01542 ATGGCCATGGATGCAAATGGGGTTCTTTCTTTTTCAGATGATTTGGTGTTTAAGCAGAAGAAAGATGAAGTTTTCAACAATGGCTGCTCTCATCAGCATGTTGCAGTTGAAAATCAAAAAGAAGAAGAAGAAGACGACTCCATTAATAGTGATGCTCTCAACCATCCAACCATTCCTGGTTGGTTCTCTGAGCACTGCCCACAATGGCCAGGTCAAGCACACTTCTTAAAGGTGGACAAAGTTTTGTTTCAAGGAAAGTCCGATTACCAATCCATGTTGGTGTTTCAGTCATCAGCATATGGAAAGGTTTTGCTGATTGGGGGAGGAGATGGTGGCATCCTAAGAGAAATTTCTAGGCATTCTTCCATTGAACAAATTGATATTTGTGAAATAGACACCATGCTCATTGACGTGTACAAGAAGTATTTTCCAGAAATTGCAGTTGGGTATAAAGATTCTCGAGTGAATCTTCACATAATAGATGGAACTGCGTTTCTGAGTTCCGTTCCAGCAGGAACCTACGATGCAATCATAGTCGACGCTTTCGATCCAATAAAGCCAGATGATGAGGTTGTGAGAAGTAGCTTGTTTGAGAAGGTGGCAAAAGCACTTAGGGATGGAGGAGTGCTTTGTATTCAAGCAGAAAGCCTTTGGTTTCATTCTCTTGACATTGAAATTTTGATCTCAAAATGCCAACAAGTATTCAAAGGCTCAGTTCAATATGCTTGGACCATTGTTCCTACTTATCCTAGTGGGGTAATTGGTTTCTTGTTGTGTTCCACTCAAGGACCTAAAGTTGACTTCAAAAATCCGATCAATCCCATTGACCCAAATGAGAATTTTGGAGTTGCAACCAAACCGTTGAAGTTTTACAATTCAGAGGCA 885 40.68 MAMDANGVLSFSDDLVFKQKKDEVFNNGCSHQHVAVENQKEEEEDDSINSDALNHPTIPGWFSEHCPQWPGQAHFLKVDKVLFQGKSDYQSMLVFQSSAYGKVLLIGGGDGGILREISRHSSIEQIDICEIDTMLIDVYKKYFPEIAVGYKDSRVNLHIIDGTAFLSSVPAGTYDAIIVDAFDPIKPDDEVVRSSLFEKVAKALRDGGVLCIQAESLWFHSLDIEILISKCQQVFKGSVQYAWTIVPTYPSGVIGFLLCSTQGPKVDFKNPINPIDPNENFGVATKPLKFYNSEA 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25771974 25779002 - Lsi06G015420.1 Lsi06g01542 666272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01542 295 CDD AdoMet_MTases 124 213 - -
Lsi06g01542 295 Hamap Polyamine aminopropyltransferase [speE]. 60 293 IPR001045 GO:0003824
Lsi06g01542 295 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 102 261 IPR030374 -
Lsi06g01542 295 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 59 101 IPR030374 -
Lsi06g01542 295 PANTHER SPERMIDINE SYNTHASE 102 294 - -
Lsi06g01542 295 PANTHER SPERMIDINE SYNTHASE 54 104 - -
Lsi06g01542 295 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 59 293 IPR029063 -
Lsi06g01542 295 Pfam Spermidine synthase tetramerisation domain 60 107 IPR035246 -
Lsi06g01542 295 PANTHER SPERMIDINE/SPERMINE SYNTHASE 54 104 IPR001045 GO:0003824
Lsi06g01542 295 PANTHER SPERMIDINE/SPERMINE SYNTHASE 102 294 IPR001045 GO:0003824
Lsi06g01542 295 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 103 116 IPR030373 -
Lsi06g01542 295 Gene3D Vaccinia Virus protein VP39 86 295 IPR029063 -
Lsi06g01542 295 Pfam Spermine/spermidine synthase domain 97 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01542 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101210007 494.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00359 Lsi06g01542 CCT
Lsi02g00359 Lsi06g01542 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00086 Lsi-Chr5:1579443 Lsi06g01542 Lsi-Chr6:25771974 3.41E-77 dispersed
Lsi06g01542 Lsi-Chr6:25771974 Lsi09g00028 Lsi-Chr9:272284 3.69E-89 dispersed
Lsi02g00359 Lsi-Chr2:3061914 Lsi06g01542 Lsi-Chr6:25771974 5.29E-65 wgd
Lsi04g00535 Lsi-Chr4:4946208 Lsi06g01542 Lsi-Chr6:25771974 1.41E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g719 . . Bda06g00587 . Bpe12g00587 . . . Cmo13g00925 . Cma10g00133 . Car10g00126 . . Cpe20g00230 . Bhi02g00426 . . . . . . Cla06g01652 Cam06g1836 Cec06g1887 Cco06g1892 Clacu06g1796 Cmu06g1738 Cre06g2556 Cone2ag0896 . . . Lsi02g00359 Csa01g00837 Chy12g01282 Cme12g01707 Blo13g00052 Blo15g00274 . . Bpe07g00828 . . Bma08g00171 Sed08g2494 Cmo10g00140 . Cma13g00898 . Car13g00738 . . Cpe18g00837 Bhi08g01589 Tan05g2027 Cmetu12g1070 Lac10g0432 Hepe07g2240 . . Cla01g01286 Cam01g1442 Cec01g1480 Cco01g1447 Clacu01g1353 Cmu01g1257 Cre01g1279 Lsi06g01542 Csa01g00162 Chy02g02568 Cme02g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01542 Lsi_Chr06 FPKM 24.210838 26.032574 21.110624 18.642866 13.604649 12.861393 13.570493 33.48513 33.494816 35.053547