Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01543 ATGCATAACATAGCGTATTCTCGATTAGGCGGACTTCAAAAATCCCTTTCTTTATACAGAAAAGTTCCATGGTGGGATCATATTCTAAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTTCTCGTCACTTGTTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTTATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGTCTTGGCATCGTCATCACTTTCTTTCGCACCATCGTCGATTTCTTTTCAATGTTTCACATTCTTATGAAGTTTCGCACTGCTTTCGTCGCCCCTAATTCTAGGTATGCACCCAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCTTATAATCTCCTTCTCTATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATATAGCATCAATTCAGCGTCAGGATGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACAACTCATTCTCCTTCTTGCCAGCCTTTTTTTCTGGACTGTGATAGTTTGACTAGGCCAGAACGACAAGCTTGGCTAAGAGTTACTCACGTTCTTACAAACTGTGATGCATTTAACGATGAAAATAATTTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTCTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGTTTGAAGAGTTTGAGTTCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTATGATTTGCTCTATGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGGGCTATCTGCAATCCACATCAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTGCCCTTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCGATCTTGCGCTCATTACCTTTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGTCGTCGTCTCGTCTCGTCGTTGAATACCAAAGACACATTCATAACCAGAGAGGGAGATCCAGTAAATGAGATGCTGTTCATCATCAGAGGTCAATTAGAGAGCTCCACCACAAATGGTGGCAGGTCAGGATTCTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAACTACTAACGTGGGCCTTAGTCCCAAATCCTAGCCTAAGCTTCCCCTCCTCAACTCGAACCGTGAAGTCACTCACCGAAGTCGAGGCATTTGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAAGAGCTTTATTACACAACAATCTTGGACCAAGATAATAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACCAGTGGCTCCAAAAATAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAACAAATACAAGAAGAGGAGTTAACCAAAAGTTGGCTGTACTTGACCCTGATGCCTCCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGACTTCTCTGCTTTCCAAGATGACAATTGA 1836 42.76 MHNIAYSRLGGLQKSLSLYRKVPWWDHILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVITFFRTIVDFFSMFHILMKFRTAFVAPNSRYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYIASIQRQDECWKIECRKEMNTTHSPSCQPFFLDCDSLTRPERQAWLRVTHVLTNCDAFNDENNFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSSYGQNLTTSTYSGEILFSIMICSMGLVLFSHLIGQVQGYLQSTSARLEQWRVKRRDTEEWMRHRQLPFHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRRLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPNPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDNSHGSEMEGEGDGETSGSKNNSKNKAQNLGITMLASKFATNTRRGVNQKLAVLDPDASSLKMPKLFKPDEPDFSAFQDDN 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25786415 25790162 + Lsi06G015430.1 Lsi06g01543 666273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01543 611 Gene3D Jelly Rolls 372 493 IPR014710 -
Lsi06g01543 611 ProSiteProfiles Adenosine to inosine editase domain profile. 33 89 IPR002466 GO:0003723|GO:0004000|GO:0006396
Lsi06g01543 611 SUPERFAMILY Voltage-gated potassium channels 31 296 - -
Lsi06g01543 611 MobiDBLite consensus disorder prediction 591 611 - -
Lsi06g01543 611 Gene3D Helix hairpin bin 300 364 - -
Lsi06g01543 611 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 108 - -
Lsi06g01543 611 Pfam Ion transport protein 57 301 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi06g01543 611 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 1 108 - -
Lsi06g01543 611 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 109 607 - -
Lsi06g01543 611 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 109 607 - -
Lsi06g01543 611 SMART cnmp_10 352 488 IPR000595 -
Lsi06g01543 611 Pfam Cyclic nucleotide-binding domain 380 468 IPR000595 -
Lsi06g01543 611 MobiDBLite consensus disorder prediction 533 555 - -
Lsi06g01543 611 CDD CAP_ED 348 488 IPR000595 -
Lsi06g01543 611 SUPERFAMILY cAMP-binding domain-like 303 482 IPR018490 -
Lsi06g01543 611 ProSiteProfiles cAMP/cGMP binding motif profile. 348 487 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01543 Lsi-Chr6:25786415 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi03g01408 Lsi-Chr3:25030619 Lsi06g01543 Lsi-Chr6:25786415 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01543 K05391 - csv:101209760 893.649