Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01544 ATGGCTGCTCGTAGAGGAATCTGTTCTTTACTCTCTCGTTCTCTCTTATCTTCTTCTTCTTCTTCTTTTTCTTCTTCTCCTTCTTCTTCTGCTTATGGGTTTAGTTCTCTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCATGGAAGAGGGAATAGATTCAGCACATCTGCTTTGGCAGAGGAGGAACTTATCACTCCTCCTGTTCAGATAAGAAAAACGTTTCCGACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGCCGATGCCGAGGATATCAACCGTGCGGTATCAGCAGCTCGAAAGGCTTTTGACGAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCCGATTTGATTGAAAAACATATCCCTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCGGTTAAATCTGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCCGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCTTGTGGCAACACTGTTGTCCTGAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTCGTTTCGGGCTATGGTCCGACAGCCGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCGACGAGCACAGGAAAAGTTGTACTTGAATTGGCAGCAAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTCTTCAATCAGGGACAATGTTGTTGTGCTGGGTCTCGTACTTTTGTTCATGAGCGTGTATACGACGAGTTTGTCGAAAAATCAAGGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAATCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGGTAGACTTGGGTCTAAGGGATACTTCATTGAGCCAACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCGAAAGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCTACTCGTTACGGTCTAGCTTCAGGAGTTTTCACATCGAACATCGACACAGCCAACACGCTAACACGAGGATTGAGAACGGGGACCGTGTGGCTCAATTGCTTCGACATCTTCGACGCTGCAATACCGTTTGGCGGGTATAAGATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTTCAAAGCTACTTGCAAGTAAAGGCTGTTGTTACACCTCTTAAGAATCCAGCATGGTTGTGA 1617 45.08 MAARRGICSLLSRSLLSSSSSSFSSSPSSSAYGFSSLLQSHGRVSRFHGRGNRFSTSALAEEELITPPVQIRKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDEGPWPRMTAYERSRILLRCADLIEKHIPELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFEKILRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANTLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25796226 25799926 + Lsi06G015440.1 Lsi06g01544 666274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01544 538 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 47 538 - -
Lsi06g01544 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491
Lsi06g01544 538 SUPERFAMILY ALDH-like 73 532 IPR016161 GO:0016491
Lsi06g01544 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491
Lsi06g01544 538 CDD ALDH_F2BC 73 530 - -
Lsi06g01544 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 528 IPR016162 GO:0016491
Lsi06g01544 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Lsi06g01544 538 Pfam Aldehyde dehydrogenase family 73 528 IPR015590 GO:0016491
Lsi06g01544 538 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00309 Lsi-Chr2:2670675 Lsi06g01544 Lsi-Chr6:25796226 1.79E-12 dispersed
Lsi02g02891 Lsi-Chr2:35134966 Lsi06g01544 Lsi-Chr6:25796226 2.73E-50 dispersed
Lsi06g00887 Lsi-Chr6:18456912 Lsi06g01544 Lsi-Chr6:25796226 7.13E-125 dispersed
Lsi06g01516 Lsi-Chr6:25587178 Lsi06g01544 Lsi-Chr6:25796226 2.34E-119 dispersed
Lsi06g01544 Lsi-Chr6:25796226 Lsi11g00444 Lsi-Chr11:4619163 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01544 K00128 - csv:101209430 971.074