Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01545 ATGAAGGAGAACAATGATGGATTTGTGCGTGCGGATCAGATTGATCTCAAGAGTTTGGATGAACAGCTTGAGAGGCATCTTAGTAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGATGGCGGCAATAGCTTTCTCACTTCCGCTCCTATAGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGACCGGCAGGAGTGGGAGATCGATCCGTCTAAATTGATTATCAAAAGCGTCATTGCTCGTGGTACTTTCGGCACCGTTCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCAGCTTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGGTCACTACAACTTCATTGTGTATTTACCTACTTCTTGTGATTCTGAAACTTGAAATGGATGTCTTGTTAGCTCCTCGTTCCAACCCTCAACTTTGGTTTCTAGTTTTGGATTTTTCACGGGTTTCAATTGATTTTCAGTTTATAGGGGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCCGGAGGCGCCCTTAAATCTTATCTCATAAAAAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACTGGGGAGACTGGGACACTTGGTTACATGGCTCCAGAGGTTCTCAATGGTAACCCATATAATAGGAAGTGTGATGTGTATAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGTCCGAGCTCTCTAGCAAATGTGATGAAGCGTTGCTGGGATGCGACCCCAGACAAGCGGCCCGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA 1278 45.54 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGGNSFLTSAPIARSRSTKVAAKDRQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKVTTTSLCIYLLLVILKLEMDVLLAPRSNPQLWFLVLDFSRVSIDFQFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25801745 25805609 - Lsi06G015450.1 Lsi06g01545 666275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01545 425 PIRSF ILK 38 154 - -
Lsi06g01545 425 PIRSF ILK 210 405 - -
Lsi06g01545 425 Gene3D Phosphorylase Kinase; domain 1 56 157 - -
Lsi06g01545 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lsi06g01545 425 PRINTS Tyrosine kinase catalytic domain signature 257 275 IPR001245 GO:0004672|GO:0006468
Lsi06g01545 425 PRINTS Tyrosine kinase catalytic domain signature 219 232 IPR001245 GO:0004672|GO:0006468
Lsi06g01545 425 PRINTS Tyrosine kinase catalytic domain signature 323 345 IPR001245 GO:0004672|GO:0006468
Lsi06g01545 425 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672|GO:0006468
Lsi06g01545 425 MobiDBLite consensus disorder prediction 30 44 - -
Lsi06g01545 425 Pfam Protein tyrosine and serine/threonine kinase 213 396 IPR001245 GO:0004672|GO:0006468
Lsi06g01545 425 Gene3D Transferase(Phosphotransferase) domain 1 203 403 - -
Lsi06g01545 425 Coils Coil 16 36 - -
Lsi06g01545 425 ProSiteProfiles Protein kinase domain profile. 76 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01545 425 PANTHER - 1 150 - -
Lsi06g01545 425 PANTHER - 188 419 - -
Lsi06g01545 425 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 150 - -
Lsi06g01545 425 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 188 419 - -
Lsi06g01545 425 MobiDBLite consensus disorder prediction 30 50 - -
Lsi06g01545 425 CDD STKc_MAP3K-like 82 396 - -
Lsi06g01545 425 SUPERFAMILY Protein kinase-like (PK-like) 57 396 IPR011009 -
Lsi06g01545 425 SMART serkin_6 76 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01626 Lsi-Chr5:23901512 Lsi06g01545 Lsi-Chr6:25801745 4.30E-23 dispersed
Lsi06g01545 Lsi-Chr6:25801745 Lsi01g00468 Lsi-Chr1:3908545 2.14E-57 dispersed
Lsi03g01392 Lsi-Chr3:24889505 Lsi06g01545 Lsi-Chr6:25801745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83749 PF07714 PK_Tyr_Ser-Thr 6.60E-54 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01545 - - csv:101209182 744.191