Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01545 | ATGAAGGAGAACAATGATGGATTTGTGCGTGCGGATCAGATTGATCTCAAGAGTTTGGATGAACAGCTTGAGAGGCATCTTAGTAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGATGGCGGCAATAGCTTTCTCACTTCCGCTCCTATAGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGACCGGCAGGAGTGGGAGATCGATCCGTCTAAATTGATTATCAAAAGCGTCATTGCTCGTGGTACTTTCGGCACCGTTCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCAGCTTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGGTCACTACAACTTCATTGTGTATTTACCTACTTCTTGTGATTCTGAAACTTGAAATGGATGTCTTGTTAGCTCCTCGTTCCAACCCTCAACTTTGGTTTCTAGTTTTGGATTTTTCACGGGTTTCAATTGATTTTCAGTTTATAGGGGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCCGGAGGCGCCCTTAAATCTTATCTCATAAAAAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACTGGGGAGACTGGGACACTTGGTTACATGGCTCCAGAGGTTCTCAATGGTAACCCATATAATAGGAAGTGTGATGTGTATAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGTCCGAGCTCTCTAGCAAATGTGATGAAGCGTTGCTGGGATGCGACCCCAGACAAGCGGCCCGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA | 1278 | 45.54 | MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGGNSFLTSAPIARSRSTKVAAKDRQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKVTTTSLCIYLLLVILKLEMDVLLAPRSNPQLWFLVLDFSRVSIDFQFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25801745 | 25805609 | - | Lsi06G015450.1 | Lsi06g01545 | 666275 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01545 | 425 | PIRSF | ILK | 38 | 154 | - | - | |
Lsi06g01545 | 425 | PIRSF | ILK | 210 | 405 | - | - | |
Lsi06g01545 | 425 | Gene3D | Phosphorylase Kinase; domain 1 | 56 | 157 | - | - | |
Lsi06g01545 | 425 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 263 | 275 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g01545 | 425 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 275 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g01545 | 425 | PRINTS | Tyrosine kinase catalytic domain signature | 219 | 232 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g01545 | 425 | PRINTS | Tyrosine kinase catalytic domain signature | 323 | 345 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g01545 | 425 | PRINTS | Tyrosine kinase catalytic domain signature | 367 | 389 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g01545 | 425 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Lsi06g01545 | 425 | Pfam | Protein tyrosine and serine/threonine kinase | 213 | 396 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g01545 | 425 | Gene3D | Transferase(Phosphotransferase) domain 1 | 203 | 403 | - | - | |
Lsi06g01545 | 425 | Coils | Coil | 16 | 36 | - | - | |
Lsi06g01545 | 425 | ProSiteProfiles | Protein kinase domain profile. | 76 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g01545 | 425 | PANTHER | - | 1 | 150 | - | - | |
Lsi06g01545 | 425 | PANTHER | - | 188 | 419 | - | - | |
Lsi06g01545 | 425 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 150 | - | - | |
Lsi06g01545 | 425 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 188 | 419 | - | - | |
Lsi06g01545 | 425 | MobiDBLite | consensus disorder prediction | 30 | 50 | - | - | |
Lsi06g01545 | 425 | CDD | STKc_MAP3K-like | 82 | 396 | - | - | |
Lsi06g01545 | 425 | SUPERFAMILY | Protein kinase-like (PK-like) | 57 | 396 | IPR011009 | - | |
Lsi06g01545 | 425 | SMART | serkin_6 | 76 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01626 | Lsi-Chr5:23901512 | Lsi06g01545 | Lsi-Chr6:25801745 | 4.30E-23 | dispersed | |
Lsi06g01545 | Lsi-Chr6:25801745 | Lsi01g00468 | Lsi-Chr1:3908545 | 2.14E-57 | dispersed | |
Lsi03g01392 | Lsi-Chr3:24889505 | Lsi06g01545 | Lsi-Chr6:25801745 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83749 | PF07714 | PK_Tyr_Ser-Thr | 6.60E-54 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01545 | - | - | csv:101209182 | 744.191 |