Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01546 ATGGTCTTTATCGTCTTCTTCCTCCTCTTCTCCCAACTGTCTCTCTCTCTGTTCCATGTTTCGTTTGCTTCTCCAGATCATCAACAGCCCAATCCATTCACCGCCAAAGCTTCTCTGCTTCGCTACTGGAACTCCCATGTCTCCAACCAACTTCCTCCTGATTTTCTCTTCTCCAAAGCCACCCCACTCTCTGCCGTCGACGCCGCCGTCCTAGCCAGCCACGCCGCCCGAGGCTCACTCTCGTCTCGTTTGGAATCATTCTGTTATTCTGCTAATTTGTTCTGTTCGTTTGATTCCGAAACGGAAATTTCTGTTCCGCGTTTTAAGGACGCCGATTTCAAATTGTATGGCAACAAAAATTTCGTGAACTATGGCGGAGCTCGACTCGGTGGTACTGACTCGTTCAAGAATTATTCCGACGGGTTGAACACGGCGGATCACTCGTTTAAGCGATATGGCGGAAACTCGAGTAATCACAAGGAAGGATTCACGAACTATGCGGAGGATGGTAATGTGGCGAACTCTAATTTTATCAGTTATGCTGCTGAATCAAATGGCGGTTCTGGCGAGTTCGTGAACTACGATAAACTCGTTAATGTGCCGAATCTCCGATTCACGGCTTACGATTTGGACTCCAGAACTCATAAGCTCTCGTTCACGAGTTACGGGAACGAGACGAATTCCGGGAGTCAATCGTTCACGAGCTATGGCAAGAACGGCAATGGCGTTCCGCAGGAATTCAGTAGCTACTCTGATGGCTCGAATATTCTCACATCGACATTCACTGGCTACGGCGAGTCAGGGAAGACGGCGAACGATTCGTTCAAGGAGTACGGTCTCTCCGGTAACAATCCGCACACGAACTTCAAGAACTACGGCAAGGGCGGAAACTCGGAGATCGATACATTTTCGAATTACAGAAACGGAGCGAACGTTGGCGACGATAGTTTTCTGTCGTACGCGAAGAATTCGAACTCCGGGCGAGTGAACTTTGCAAATTACGGAAAATCTTTCAACCATGGAAACGATTCATTCAAAGAATACGGCAAAGGATCGATCGGGCGAACGACGGTGGGATTCAAAAGCTACAGCGTTGATCGGAACTTCACGATGTACGCACAGAAAGGCGTATCGTTTTCGGAATACAGCAATTTCACGACGGCGACGGGGAGTGGCATTCACGTAAATAAACGGGTAGAACCGGGCAAATTCTTCAGAGAGTCTGAATTGAAGCAGGGGAATGTCATGGTGATGCCGGACATCAGAGACAAAATGCCACCGAGATCATTCCTCCCTAGACCCATTTTGGTAAATTTACCCTTCTCCTCCTCAAGAATCTCAGAGGCCAAGGAAATCTTCCACGCGCGAGATGGTTCGACAATGGAGCGCGTAATTACCAACGCGCTAACGGAGTGCGAGCGTGCGCCGAGCCGTGGCGAGACGAAGCGGTGCGTGGGTTCGGCCGAGGACATGATAGACTTCGCCACGGTGGTGCTGGGGCGGAGCGTGGTGGCGAGGACGACGGCCAGTGTGAATGGGTCAAGCGAGAAAGTGGAGATCGGGCGAGTAAATGGAATCAACGGCGGAGATTTAACGAGATCAGTATCATGCCATCAGAGTTTGTACCCTTACTTACTGTATTACTGCCACTCAGTGCCGAAAGTCCGTATCTACGAAGCAGATATCTTGAGGCTGAAAACGAAGGAAAAAATCAATCGTGGGGTTGCCATCTGTCATATAGACACGTCATCGTGGGGCCCAGAGCACGGTGCATTCGTGGCACTTGGGTCGGGTCCGGGTCAAATTGAAGTCTGCCATTGGATATTCGAGAACGACATGTCGTGGAGTGTCACCGACTAA 1860 50.05 MVFIVFFLLFSQLSLSLFHVSFASPDHQQPNPFTAKASLLRYWNSHVSNQLPPDFLFSKATPLSAVDAAVLASHAARGSLSSRLESFCYSANLFCSFDSETEISVPRFKDADFKLYGNKNFVNYGGARLGGTDSFKNYSDGLNTADHSFKRYGGNSSNHKEGFTNYAEDGNVANSNFISYAAESNGGSGEFVNYDKLVNVPNLRFTAYDLDSRTHKLSFTSYGNETNSGSQSFTSYGKNGNGVPQEFSSYSDGSNILTSTFTGYGESGKTANDSFKEYGLSGNNPHTNFKNYGKGGNSEIDTFSNYRNGANVGDDSFLSYAKNSNSGRVNFANYGKSFNHGNDSFKEYGKGSIGRTTVGFKSYSVDRNFTMYAQKGVSFSEYSNFTTATGSGIHVNKRVEPGKFFRESELKQGNVMVMPDIRDKMPPRSFLPRPILVNLPFSSSRISEAKEIFHARDGSTMERVITNALTECERAPSRGETKRCVGSAEDMIDFATVVLGRSVVARTTASVNGSSEKVEIGRVNGINGGDLTRSVSCHQSLYPYLLYYCHSVPKVRIYEADILRLKTKEKINRGVAICHIDTSSWGPEHGAFVALGSGPGQIEVCHWIFENDMSWSVTD 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25815711 25817854 - Lsi06G015460.1 Lsi06g01546 666276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01546 619 Pfam BURP domain 404 615 IPR004873 -
Lsi06g01546 619 ProSiteProfiles BURP domain profile. 404 618 IPR004873 -
Lsi06g01546 619 PANTHER POLYGALACTURONASE-1 NON-CATALYTIC SUBUNIT BETA 5 619 - -
Lsi06g01546 619 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 5 619 - -
Lsi06g01546 619 SMART BURP_2 402 618 IPR004873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01546 - - - cmo:103493915 1095.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01546 Lsi-Chr6:25815711 Lsi08g01683 Lsi-Chr8:24571354 0 dispersed
Lsi06g01546 Lsi-Chr6:25815711 Lsi11g01088 Lsi-Chr11:18983725 9.49E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g730 . . Bda06g00590 . . . . . . . Cma10g00130 . Car10g00122 . Sed08g0134 . . Bhi02g00434 Tan09g2235 Cmetu02g1681 . Hepe09g0194 . . Cla06g01656 Cam06g1840 Cec06g1891 Cco06g1896 Clacu06g1800 Cmu06g1742 Cre06g2560 . . Cone13ag0134 . . . . . . . . . Bpe07g00832 . . . . Cmo10g00137 . . . . . . Cpe18g00840 . . . . . . . . . . . . . . Lsi06g01546 Csa01g00158 Chy02g02572 Cme02g01962
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013205 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01546 Lsi_Chr06 FPKM 5.688962 4.277528 13.106176 13.172997 2.927022 3.900377 2.747612 0.494583 0.4644 0.278737