Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01548 ATGGGTGTTGCTAACACCTCGTGGGTTGCTGGACAAGCAATACCCATGCTCCAATTCACTCCCTTTTGTTGCTTCGATTTATCCCCCAAGAAATCTAATGATTCGAGGCTGATTATGAGTTGGGGTTGTGCTATTCACAATCAGCCTAAGCTTTCTATTACTTCCATTAGAAATCCTAGAAGTTCTGCCTTGTTTTGTCGTTGCAGTGGTAATGGCAGCAGTACTAGCGACAGTAATAGTAACGCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTGGAATGGGATTGGGTTAGGTGGAACCGGTATTTCTCTGAAATGGAACAGGCTGAAAGCTTTGCCTCTGTTCTCAAGTTTCAACTTGAAGAGGCCGTTGAGAAAGAAGACTTTGAAGAAGCTGCAAAATTGAAACTGGCTATTGTTGAAACTACACAAAAGGACAGTGTTGCTGAAATTATGTACCAGTTGAAGAGTGCAATAGAGGAGGAGCGATACCAAGATGCTTCAGTGTTGTGTGAAAAACATGGGAAGTTGAGCCAGTTGACCGTGGGATGGTGGGTGGGGTACTCTCAAGATTCAGATGATCCCTTTGGCAGATTAATACGTATAACTCCTGGAGTTGGTAGATTTATTGGGAGGGGTTACAGTCCAAGACAGTTGGTTACTGCATCGCCAGGAACTCCACTGTTTGAGATTTTTATTGTCAAAGATGATGAAGAGAGATATGTCATGCAGGTAGTGTACTTGCAACGATCCAAAAGAAATTCAAAAATCTCAACAAGTCCACCATCAGAGCCTTCAAGTAGCCCCTCCACATCTGGAGTCAAGAATCAAGCTGCTGTAGACATTCCAGAGAATGAGGCCACGAAGGAGCAAAGTGAGGAAAAGGGTGTTACTATGGAAGGAGCTACTGAGGAGGGAATAAAGGGGGTGATAAATTTTTTGAAAGATAAAATTCCGGGATTGAAAGTTAAAGTAATGAATATCAATGTTCCCGAGGAAGTCATTGAGAATGCTAACTCTGTCAAGCAATTGATGCAAGAAGATAGTGAGAAGACAGGGACTGGTGGGAATTCTGATGATGAAATGGATAAGTTAGATGAGATTCAGCCTGAGGCAGTTTCATTAGGTGAGAATAGCGATGCTAGTGACGATGAAAAAGATTTAGATATGAAGCTTTATATTGGTGGGGTTGTACATAACAGTGAAGAGACTCCTACAAAGGAGGAGTTTGTACGCCATCCAGCTTATATTCAGGATATGGATAGAGATTCCTTTGTGCTCCATATTCCTGGGAGAGGCCTAGATCTTGATGCTGCAGAAAATAAAGTCTCGAAGGTCAAAGTGGCAGCTTTGGCAGCCCAAGGTGTATCCGAGCTTATGCCAGCTGATGTCGCCAAAGAATTTTGGGGTGTTGATAAGGTTTCTCCAAAGGTGAGCTTGATATCCAATGGCATTTCAAGGAATGTTCGTGAGATAGTCAAACTGGCAGTCAGTCAAGCACAGAAGCGGAGTAAACTATCTGAGTATACTACTTTCAACCGGATTACTACATCGAGAGGAGACCTTGATCCATTTGATGGTAAGTCGATTGTTTTTGTTTTAACATTAGTTGCACCCACATGTTTAGATGGTGATAGCACGTGTTGTGGAGTAGGTCTCTATGTTGGTGCATTCGGCCCGTATGGTACTGAGGTGGTGCAGTTGAGACGAAAATTTGGACATTGGAATGATTTGGATAACAAGGACGAAACTTCCGATGTGGAGTTCTTTGAGTATGTAGAGGCAGTAAAGCTGACTGGTGATCTAAATCTTCCTGCTGGCCAGGTCACTTTTCGGGCTAAAATTGGGAGAGGAAACCGCACTGCCAACCGTGGAATGTATCCAGATGAACTGGGAGTGGTTGCAAGTTATAAAGGTCAAGGAAGAAGAGCTGAATTTGGGATCCGAAATCCACAATGGGTTGATGGAGAACTTCTCCAACTAAATGGCAGGGGTATTGGGCCATACGTCAAAGGTGCAGATCTCGGGTTTCTCTATGTAGCTCCCGAGCATAGTTTCCTTGTACTCTTCAACCGCTTGAAGTTACCCGAATGA 2103 43.32 MGVANTSWVAGQAIPMLQFTPFCCFDLSPKKSNDSRLIMSWGCAIHNQPKLSITSIRNPRSSALFCRCSGNGSSTSDSNSNASSSSSSSSSSSSLEWDWVRWNRYFSEMEQAESFASVLKFQLEEAVEKEDFEEAAKLKLAIVETTQKDSVAEIMYQLKSAIEEERYQDASVLCEKHGKLSQLTVGWWVGYSQDSDDPFGRLIRITPGVGRFIGRGYSPRQLVTASPGTPLFEIFIVKDDEERYVMQVVYLQRSKRNSKISTSPPSEPSSSPSTSGVKNQAAVDIPENEATKEQSEEKGVTMEGATEEGIKGVINFLKDKIPGLKVKVMNINVPEEVIENANSVKQLMQEDSEKTGTGGNSDDEMDKLDEIQPEAVSLGENSDASDDEKDLDMKLYIGGVVHNSEETPTKEEFVRHPAYIQDMDRDSFVLHIPGRGLDLDAAENKVSKVKVAALAAQGVSELMPADVAKEFWGVDKVSPKVSLISNGISRNVREIVKLAVSQAQKRSKLSEYTTFNRITTSRGDLDPFDGKSIVFVLTLVAPTCLDGDSTCCGVGLYVGAFGPYGTEVVQLRRKFGHWNDLDNKDETSDVEFFEYVEAVKLTGDLNLPAGQVTFRAKIGRGNRTANRGMYPDELGVVASYKGQGRRAEFGIRNPQWVDGELLQLNGRGIGPYVKGADLGFLYVAPEHSFLVLFNRLKLPE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25837499 25843302 + Lsi06G015480.1 Lsi06g01548 666278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01548 700 MobiDBLite consensus disorder prediction 72 93 - -
Lsi06g01548 700 PANTHER PROTEIN EXECUTER 1, CHLOROPLASTIC 66 532 IPR044680 GO:0010343
Lsi06g01548 700 PANTHER PROTEIN EXECUTER 2, CHLOROPLASTIC 66 532 - -
Lsi06g01548 700 PANTHER PROTEIN EXECUTER 2, CHLOROPLASTIC 555 700 - -
Lsi06g01548 700 MobiDBLite consensus disorder prediction 289 304 - -
Lsi06g01548 700 MobiDBLite consensus disorder prediction 256 281 - -
Lsi06g01548 700 MobiDBLite consensus disorder prediction 256 304 - -
Lsi06g01548 700 PANTHER PROTEIN EXECUTER 1, CHLOROPLASTIC 555 700 IPR044680 GO:0010343
Lsi06g01548 700 Pfam Cyclin D1 binding domain 555 698 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01548 - - - bhj:120071311 1120.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00700 Lsi-Chr3:9194608 Lsi06g01548 Lsi-Chr6:25837499 2.66E-97 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g736 . . Bda06g00591 . . . . Bma12g01033 . . Cma10g00128 Cma11g00099 Car10g00120 Car11g00099 Sed08g0131 . Cpe04g01550 Bhi02g00436 Tan09g2239 Cmetu01g2583 . Hepe09g0196 . . Cla06g01658 Cam06g1843 Cec06g1894 Cco06g1899 . Cmu06g1744 Cre06g2562 . . Cone13ag0135 Cone19ag0137 . . . . . Blo15g00271 . . Bpe07g00833 . . . . Cmo10g00134 Cmo11g00099 . . . . . Cpe18g00842 . . . . . . . . . . . . . . Lsi06g01548 Csa01g00156 Chy02g02574 Cme02g01964
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005978 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01548 Lsi_Chr06 FPKM 10.05662 10.352021 4.65883 4.736547 3.534781 4.349301 3.312942 3.895496 3.446481 3.016177
Lsi06g01548 Lsi_Chr00 FPKM 8.296206 8.558202 4.538261 4.729195 3.314243 4.368438 3.301147 3.847276 3.473834 3.228469
Lsi06g01548 Lsi_Chr00 FPKM 9.997061 9.952861 4.508786 4.561413 3.464951 4.3132 3.234539 3.677451 3.233999 2.890974