Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01550 ATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGGTGTGAATAAACACAACAGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAATCGCCAAGGAGCGGGTTGAGTCTTCAGAGCCATGGAAGTGTTCATGTTGATTTTCCTGTTGATGGCTTGGTTGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGTTCTGATGGTGTGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTAGGGGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATCTTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCATTCACCATCTGCAGATAAGAAGGAGAAAGCTGAAAATACTCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTCCTCACCTGCAATTGGACCACGAGACATCTCCAAAGTCAAGTCCCAGGGGCAAGGGTCTGTTGGATAAACCCCCCATTAGCAGAAAGAATGAAAAGAATTCGAAAAAAAATAGTCCAGTTGCTGCTCATTCAAAGAAACAGAAAGATTCACCTTTGAGGGGCTCGAAAATGCAGAATGGAACTGAGGATTTCGATGAATCAATGATGGACAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGAAATTTAGTTTCTTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCGCTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAGCTTAGAACTTGTTATGTGTTTGCACGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCGATACCTCTATTGGAGCATTCCATCGAGATTCCTGCCATCAAGGAAGGCCATGAGCATGCACTGGCCAAATTTGCAGGCCACATGCAGTTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCCCATGTCCAAGCCTTGCGATTTGACGAGGCCGAGAAATTTTGTCAAATGGCACTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATTTGTGAGACAAAAGGAGATCATGAAGCTGCGCTTGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCTTGTCCCGTTACGACGAGGCCGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAGACCACCAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCTGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCGGGGATTCCTCCAGAGGAGATTGCCAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAGTCAAATTATTACACAAGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTAGGGAACTATTCTGAATCTTACGACTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGCGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAACGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAACATACTAGAGCAAGAATATGGACCTTATCATCCCGATACTCTTGGGGTGTATAGCAACCTTGCTGGAACATACGATGCGATTGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGAGAGGAAAAACTCGGGACAGCCAACCCCGACGTCGATGATGAGAAGAGGAGGTTGTCCGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCAAGATCACTCGAGACTCTTCTTGATGCCAATGCTCATCCCGTAAACAGTAAAGGTATTCAGGTTCCAGGAGACGTGGTTCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACATAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCCGAGTTGGCATGCACTGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAGGATGGCTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCAAGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGAGACTTTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAACTCCTCAATAATTTAAAGCTATCAAAAGGTGCTACCATGGCGGCAACTCAATCTGCTCCTCCTTCGAATGACGACAACTCCCAGAATTCAGCTCCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCGCCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGGCGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCCGCCACAACCCTCTACGCAGTCTCTTCAACCAGTTGCTGGTGTCACCCCTCCTGCTGGTGGTGAATCTCGTCTGGGTACCGTCCCACGGTCTAGATTCCATTGGTCACATGCCATTCTCGCAATAGGAGTATTGGCTGTTTCAGGTGCTGGAACAGTTATAGTAATCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGAAAAGTTGTATTAGAGGACAATGACATTGAGAAGAAAATTAATTCAAAACCAAGTGCAGCTGAGGAAGCAGCGGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCCGATGTGGCAAGGGCGAGTCAAGAGTTGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTACGGAAGAACTACTACTGTTGATCAAGAAGATTATCGAATTACTCCAATGAGTTCAAAGCAACCATATTCCAATGGCAAGATGGACCATAGCTTGCAGTCAGCTACACCTGCCACACCTGTTGAACCCTCAGTTGCACCACATCCCAAGTCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATAGATGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAAGTTGGTACGCAAAACAATCCTGGCTTTTTCCCTCAGTCTCAAGATGATGCTGGTTTGAATTCCTTGGTACAAAACAATGGTGTGACTTACGAGAACGATAACGCTTCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACAGAGGTTGACAATAATGAGTTGAAGGTAGGCTCTTCCAATGGTCTCTCTGCTGAGAAACCAGTTCAACGTGCATGGGTTCCTCCTCAACCACCACTTGTTGCATTGCCAGAAGCAGCTGAAGCCATCCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGTTTACTGACGAACAGTCAGCAACACAACCAAATGTAACTGATGAGTTGCAGAAGGCCACAAAAATTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGATAGCGGCTCTGGAGGACAATGA 4455 45.12 MPGIVMDEINEERGVNKHNSSSIHMEESYGNKSPRSGLSLQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGVESRIDSELNHLVGGEMREVEIIKEEEDLVEKPEHDFPSDSMNHSPSADKKEKAENTQPGSSKRLSSGKKAPHLQLDHETSPKSSPRGKGLLDKPPISRKNEKNSKKNSPVAAHSKKQKDSPLRGSKMQNGTEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPSLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYDSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKNILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKGIQVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSHKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPASPVLESLGKKLSFEIAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSKGATMAATQSAPPSNDDNSQNSAPAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVPPQPSTQSLQPVAGVTPPAGGESRLGTVPRSRFHWSHAILAIGVLAVSGAGTVIVIKNSIIPRLKSWVRKVVLEDNDIEKKINSKPSAAEEAAAAAKAAAAAASDVARASQELLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKMDHSLQSATPATPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPGFFPQSQDDAGLNSLVQNNGVTYENDNASVPWWQKRNVNITEVDNNELKVGSSNGLSAEKPVQRAWVPPQPPLVALPEAAEAIRRPKPTIQKEQFTDEQSATQPNVTDELQKATKISESGGAIDYENLGVSSSEIQVEDSGSGGQ 1484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25857697 25874301 + Lsi06G015500.1 Lsi06g01550 666280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01550 1484 CDD S1_Rrp40 790 875 IPR037319 GO:0003723
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1254 1282 - -
Lsi06g01550 1484 Gene3D Tetratricopeptide repeat domain 431 603 IPR011990 GO:0005515
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1468 1484 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 69 83 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1 42 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 69 88 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 116 226 - -
Lsi06g01550 1484 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 726 - -
Lsi06g01550 1484 SMART tpr_5 611 644 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 361 394 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 276 309 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 653 686 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 569 602 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 528 561 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 443 476 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 485 518 IPR019734 GO:0005515
Lsi06g01550 1484 SMART tpr_5 319 352 IPR019734 GO:0005515
Lsi06g01550 1484 Gene3D - 1011 1077 IPR036388 -
Lsi06g01550 1484 Gene3D Tetratricopeptide repeat domain 604 710 IPR011990 GO:0005515
Lsi06g01550 1484 Pfam Tetratricopeptide repeat 612 679 - -
Lsi06g01550 1484 Pfam Tetratricopeptide repeat 442 517 - -
Lsi06g01550 1484 Pfam Tetratricopeptide repeat 324 393 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1063 1111 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 965 987 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1303 1327 - -
Lsi06g01550 1484 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 726 - -
Lsi06g01550 1484 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 877 959 IPR036612 GO:0003723
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 116 144 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 179 209 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1068 1098 - -
Lsi06g01550 1484 Pfam Family of unknown function (DUF5572) 1284 1333 - -
Lsi06g01550 1484 Gene3D K Homology domain, type 1 874 957 IPR036612 GO:0003723
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 156 170 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1432 1453 - -
Lsi06g01550 1484 Pfam KH domain 878 926 IPR004088 GO:0003723
Lsi06g01550 1484 SUPERFAMILY TPR-like 230 688 IPR011990 GO:0005515
Lsi06g01550 1484 Gene3D - 797 873 IPR012340 -
Lsi06g01550 1484 SUPERFAMILY Nucleic acid-binding proteins 789 881 IPR012340 -
Lsi06g01550 1484 ProSiteProfiles TPR repeat profile. 528 561 IPR019734 GO:0005515
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 965 1014 - -
Lsi06g01550 1484 Gene3D - 711 792 - -
Lsi06g01550 1484 Gene3D Tetratricopeptide repeat domain 234 430 IPR011990 GO:0005515
Lsi06g01550 1484 Pfam Pex14 N-terminal domain 1019 1063 IPR006785 -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 21 42 - -
Lsi06g01550 1484 Coils Coil 694 714 - -
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1423 1484 - -
Lsi06g01550 1484 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515
Lsi06g01550 1484 MobiDBLite consensus disorder prediction 1254 1277 - -
Lsi06g01550 1484 SUPERFAMILY Ribosomal L27 protein-like 735 789 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01550 - - - bhj:120070989 1394.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02218 Lsi-Chr2:28613543 Lsi06g01550 Lsi-Chr6:25857697 1.93E-50 dispersed
Lsi06g01550 Lsi-Chr6:25857697 Lsi07g00748 Lsi-Chr7:8195768 0 dispersed
Lsi06g01550 Lsi-Chr6:25857697 Lsi02g00366 Lsi-Chr2:3140797 1.19E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01550 Lsi_Chr06 FPKM 13.033583 14.456303 5.651789 5.986348 8.116716 6.358232 7.35957 8.511483 7.530425 7.138672
Lsi06g01550 Lsi_Chr00 FPKM 10.418612 10.9289 5.697174 6.748452 7.605659 7.616546 6.736167 9.015495 8.173493 8.507544