Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01554 ATGTTCCAGATTCTGTCACCATTGACGGCTGCTCTGCCTAGCTCGCGCCGTCGTGCTCAGCCCGCCCCAAGCGTCTCTGCCCTGATCCGCGCTCTCGCCTTGGGTTTCATCCAATCTTCAGAATCATTTCAGTTTCACACTGCTATGTTGTCTGCCCATTGTGAACTGATTGATTCCTTCGTGTTTATAGTAGAGATGCACTACAAAATCACAGAAGCAATTCATCACAGGCATAAATCTCATCGATTAGCAGCAATTGAAGTGCTGATCAATGTTCTTGGTCACAGAGCTGTCGTTTCTAGCACTTCAAATCCTAGCAAGGAAATCACTAGAGTCCTCGGAGAACAACTTCAGTTCTTGATATCAAAGCTGGTGACATGTTGCATCCCCTCTGAAGCTGATGGAGATTCTCTTGGCAATAGATCATCTCACCTCATATCTTTGGTTCGCCAACTCACTGTGGATTCTGATTCATCTCTCCATGATTACATCAAAGAACTGGAGCCCTTTCCTGAGATGGATATATTTGATGATATCCGAAAATTCCATCAGGAACTATGCAGAGGTTTAAAAGCATTGCATAAGAAGCTGATTGGGGGTCGAGTTTTTCACAGTGAGAATATCCAAAGTATTGATTGGCACAATGATCATGAAGTGGAACATGCAGTCTGGAAACTTATGCGAATGTGTGGTTCAGAAGATACGCGTTGTATAAGGGAGTTAGTGTCAGATTTTGTATCTAAGGTTGGTATAGGTGACCCACACTGTGTCGTTTTCCATGTACCTGGGGACGCTAAGACCATTCACATTTTTCGGCCTGTTGTTAATGGCAGTGCTTCAGAAATAGATTTCAAGATTGAAACTGGCATATCTAATGACCTTCTGGTTGAACTTTTAAAACATTTGAAAAGGTACCTGATGGATGAGTCTGTTAAAATAGTTGATATGACGTCCCAAGTTCTCCAGGTTCACTCAAAAGGGATTAACATCAAGCTGGTGGATGGGTACTTGTTGGATCTTGAAAGGAGATTTAAAGCTGAGGCCATTTCAGTGAAAAGTTCCACTGTGTGGGAGACCAATGGTAAAACTTTCGAGAAGTGGATTTGTCCATTAGTATACTCGCTAATTGGACACTCAAATGATGTGATTCTAAGATTATGTCTAGATATTGTGTTGCTAAAAGCTGAGATTGCTGAGCTTCTTTTACCCAGTGTAGTTGTCAACCTAGCTGGAAGAAAGGATTTGGATATTGATCTTCACAAACTAATTTCACTGCAGGAGCTTTGCTTCACTTTTGTTACCTATGACAATTTGCAGGTGCAGAAACACATATTTGTAGAATCAAATAAGTTGATCAAGTCAATTCAAGTACTTCTGAATACCCTTAATGAACTTCGGCTATATCATGTCATGGAACAATCTTTTGTATCTTTGAGGAAAGATAATTCTAAGGTGAAAATCCTTGCGGGGGAAATAAGCAACTATAAAGAACTTTGCAGTTTGGCGAATGAGATAGGCAAAGTTTACAGTCCTAGCGAACCGCCAAGCAGCCTTAATCTTGAAGAGAGGTTTGTTCGATACCAGGATGCAATGGCACAGATTTGGAAATCACTAGTGAATGACTCGGGAAAAAGTATTTCTAAAGCTAATAGAACTTCTTTGCTCCTTCAGTCTTCTAAGGCATCAAGTAAGAGTTCTAGATCCCGTTCCACCTCTATCAATTCTAGAGATCCAGTTGCTGCATCAAATGCTTCTGTGATGCCACCATTCTCCTGGGACAAAGTTTATTGGCTTTCCATTGACTACCTCATTGTTGCTAAAGCTGCAATTGTTAGTGGTTTCGACATTTTTCTCCTTAATCTTAATTGTCTGTATTCTGGTTCATACTTTACCTCTGTTATGTACGTTGAGCATTGGTGTGAAAAGCATTTTGGATGCCTTTCCCTGGGGACCCCAGATTTTTCTTTTGTGGAAACGCTGCCACGTCATATTGAAATACTTGTCTCAGCAGTCACTCGAATTAATGAACCCGACAGCTTGTATGGAATTATACGCTCTCACAAGGCCCTCGAATATTATGACTTGCGAGTACGATCAGATTCCATGGTTCAAGAGGATGGTGTTGTTAGAAACATTTCTATGGATAAGCAACCAAAACGGCATCAGTCAATTTCTACCTTGGAAGATGTGTCAGGACACTGGAAACCTTACAAGGGGGTTATTAGGTCTCTGCAGAAAACTGGTTGTGCACACGTTCTGGATTTATATTGCCAAGGATTAACATTCCGGGATGACCATGTTCAGCATGATTTAGAGTTCATGGAACTGCAGTATGAAGCTGCCTGGCGTGCGGGAAACTGGGATTTCTCCTTGCTTTATGCAGGACCTGATTCTGGTTCATCAAGTTATCAGACCAAGAATATTCATTTCAACGAAAACCTGCATAGTTGTTTGCGGGCATTGCAAGAAGGAGACTTTGATGAATTTTATAGAAGGTTCAAAGACTCAAAGCGGGAATTAGTGTGGTCCATAACTCATGCAAGTGAAGAAAGCACCGAATATATATATTCAACTATAATTAAGCTTCAGGTGCGTAACTTATATCTTGCTTTATGGGATAAACGACCCATGGACGATGCAGCATCTCATCAATTCCCAGGACTGAGATCTAAGTTGAAATATGTAAAACACAGTCCCTTTTTATTCCGGTGGATTGCTCTTAACAAATATTCGATCTTTTACCATATTGGCTTGGCTTGGGGATTACGATGGACGGATTCTGAAGATTCAATTTTTTTTAATGGGAATCCGAAAGTGTTCTCAGATCATGTGATTCCCACAATGGACCAGTTATCTTTCCTGAATTCTGATTGGAGCTGCATTCTGAAAAGTACTCAGCTACATATGGATTTCTTAGAACCTTTTCTAGCATTTCGTCGAGTTCTACTTCAGGTTTTGAGAAGTAAGGATTGTATGGTGCAACATCTTTTGCAATCTGCTTCCACCCTTCGCAAGGGATCTAGATATTCTCAAGCAGCTGCCGCCTTACATGAGTTTAAGTCTCTCTGTCTTCGAGAAGCAGAAGAGAATTCAGCATTGTATTGGCTCGGAAGGCTTGAAGAAGCAAAGCTGTTGCGTGCCCAAGGTCGGCACTCAATAGCAATTAGCCTTGCAGAACATGTTTCGCAATACTTCCAATCCAGTGAGGAAGCTTCAGATATATTACGCTTGGTTGGGAAGTGGCTAGCTGAAACTAGATCGAGCAATTCAAGAACTATTCTAGAGAAGTACCTAAAACCGGCAGTATCTCTTTCTGAGGGTCAGGAGTTCCTTAATAAGAAATCAGTTGGGAGACAGAGCCAGACTCATTTTCATCTTGCACATTATGCTGATGCTTTGTTTAGGAGTTATGAGGAAAGACTCAACTCTAATGAATGGCAAGCAGCAATGAATTTGAGGAAGCATAAGACAATGGAGTTGGAAGCACTCATTAGACGACTAAAAAGTTCAACAAAGGGCGAGAAGACCGACTTTACAGTGAAAATACAAGAATTGCAAAAGCAACTTTCCATGGACAGGGAAGAGGCTGACAAATTGCAGGATGACCAAGACAATTTTCTCAGCCTAGCATTAGAAGGATATAAGCGATGCTTGGAGGTTGGTGACAAATATGACGTGAGAGTGGTGTTTCGACTAGTTTCATTGTGGTTCAGCCTTTCTTCTAGACAAAATGTCATAAATAACATGCTGAGCACAATTGCTGAGGTTCAGTCGTATAAATTTATACCTCTGGTTTACCAAATTGCTTCGAGAATGGGCTGCACAAAGGATGGTCAAGGACCAAACAATTTTCAGGTAGCCTTGGTTTCTCTCGTGAAAAAAATGGCTATAGACCATCCATACCACACTATATTCCAGCTTCTTGCCCTGGCAAACGGGGATCGTGTCAAAGATAAACAACGTAGCAGAAACTCATTTATTGTGGATATGGACAAAAAATTTGCAGCAGAGTATCTATTAAAGGAGGTTTCATCCAACCATGGAGCTTTGATTAGACAAGTCAAGCAAATGGTAGAAATCTATATCAAGCTTGCAGAACTGGAGACAAGGAGAGAGGTACCTGTGGTGACGGCTACGTTTCCAGTCGACCGAAGTTGTCAATATCAGGAAGGTTCCTTCCCATATTTCAAAGGCTTGGCTGATACAGTTAGGATTATGAATGGCATAAACGCTCCAAAAGTGATTGAATGCGAAGGTTCGGATGGCCACAGATACCGACAACTTGCAAAATCAGGAAATGATGATTTGCGACAAGATGCTGTTATGGAACAATTTTTTGGATTAGTCAACACGTTTCTCCAAAACCATCAGGACGCAAAAAGGCGGAGATTAGGAATACGGACATACAAGGTCGTTCCCTTTACTCCAAGTGCCGGTGTTCTTGAATGGGTTGATGGAACTATTCCTCTTGGAGAATATCTTATAGGAAGGCACAAATTTTCTCCAAATTTTGCCAAGATTCATAAGTTCAAGCAACCGGCTGATTCATTGGTGAACCATTTGTCTCACCCAGATGCCCTAGAGGGTGCTTGTGTACAAGCATTAGTTCCACAAGGAGCCAGCTCCTCAAGAAAACGACACTCTTCTTTGGAGAAGGACAAGCGTAAAGCATTCCAGGAAGTTTCTGAGAATTTCAGGCCCGTTATGCATTACTTTTTTTTGGAGAGGTTCTTACAACCAGCTGATTGGTTTGAGAAGAGGCTTGCTTACACTCGAAGTGTGGCTGCTAGTTCAATGGTTGGTTATATTGTTGGCTTAGGAGATCGACATTCCATGAATATTTTAATTGATCAAGCTACGGCTGAGGTGGTTCACATTGATCTGGGAGTTGCCTTTGAACAAGGCTTGATGCTTAAGACACCTGAGCGGGTTCCGTTCAGGCTTACGAGAGATGTGATTGATGGCATGGGTGTTACTGGGGTGGAAGGGGTTTTCAGAAGATGTTGCGAGGAAACTCTCTCTGTTATGCGGACAAACAAAGAGGCGCTGCTAACCATCGTTGAAGTTTTCATCCATGATCCCCTGTATAAATGGGCTTTATCCCCTCTTAAGGCGTTGCAGCGTCAAAAGGAAACCGATGATGACCTGGAGACTAGTCTCGAAGGCTCAGAAGATGAATATGAAGGGAATAAGGATGCTGCGCGTGCACTGTTGCGAGTCAAACAAAAACTAGATGGATATGAAGATGGCGAAATGAGAAGTGTCCATGGACAGGTCCAACAGCTTATACAGGATGCTATCGACCCCGATCGTTTGTGCCACATGTTTCCTGGCTGGGGAGCATGGTTGTGA 5352 42.04 MFQILSPLTAALPSSRRRAQPAPSVSALIRALALGFIQSSESFQFHTAMLSAHCELIDSFVFIVEMHYKITEAIHHRHKSHRLAAIEVLINVLGHRAVVSSTSNPSKEITRVLGEQLQFLISKLVTCCIPSEADGDSLGNRSSHLISLVRQLTVDSDSSLHDYIKELEPFPEMDIFDDIRKFHQELCRGLKALHKKLIGGRVFHSENIQSIDWHNDHEVEHAVWKLMRMCGSEDTRCIRELVSDFVSKVGIGDPHCVVFHVPGDAKTIHIFRPVVNGSASEIDFKIETGISNDLLVELLKHLKRYLMDESVKIVDMTSQVLQVHSKGINIKLVDGYLLDLERRFKAEAISVKSSTVWETNGKTFEKWICPLVYSLIGHSNDVILRLCLDIVLLKAEIAELLLPSVVVNLAGRKDLDIDLHKLISLQELCFTFVTYDNLQVQKHIFVESNKLIKSIQVLLNTLNELRLYHVMEQSFVSLRKDNSKVKILAGEISNYKELCSLANEIGKVYSPSEPPSSLNLEERFVRYQDAMAQIWKSLVNDSGKSISKANRTSLLLQSSKASSKSSRSRSTSINSRDPVAASNASVMPPFSWDKVYWLSIDYLIVAKAAIVSGFDIFLLNLNCLYSGSYFTSVMYVEHWCEKHFGCLSLGTPDFSFVETLPRHIEILVSAVTRINEPDSLYGIIRSHKALEYYDLRVRSDSMVQEDGVVRNISMDKQPKRHQSISTLEDVSGHWKPYKGVIRSLQKTGCAHVLDLYCQGLTFRDDHVQHDLEFMELQYEAAWRAGNWDFSLLYAGPDSGSSSYQTKNIHFNENLHSCLRALQEGDFDEFYRRFKDSKRELVWSITHASEESTEYIYSTIIKLQVRNLYLALWDKRPMDDAASHQFPGLRSKLKYVKHSPFLFRWIALNKYSIFYHIGLAWGLRWTDSEDSIFFNGNPKVFSDHVIPTMDQLSFLNSDWSCILKSTQLHMDFLEPFLAFRRVLLQVLRSKDCMVQHLLQSASTLRKGSRYSQAAAALHEFKSLCLREAEENSALYWLGRLEEAKLLRAQGRHSIAISLAEHVSQYFQSSEEASDILRLVGKWLAETRSSNSRTILEKYLKPAVSLSEGQEFLNKKSVGRQSQTHFHLAHYADALFRSYEERLNSNEWQAAMNLRKHKTMELEALIRRLKSSTKGEKTDFTVKIQELQKQLSMDREEADKLQDDQDNFLSLALEGYKRCLEVGDKYDVRVVFRLVSLWFSLSSRQNVINNMLSTIAEVQSYKFIPLVYQIASRMGCTKDGQGPNNFQVALVSLVKKMAIDHPYHTIFQLLALANGDRVKDKQRSRNSFIVDMDKKFAAEYLLKEVSSNHGALIRQVKQMVEIYIKLAELETRREVPVVTATFPVDRSCQYQEGSFPYFKGLADTVRIMNGINAPKVIECEGSDGHRYRQLAKSGNDDLRQDAVMEQFFGLVNTFLQNHQDAKRRRLGIRTYKVVPFTPSAGVLEWVDGTIPLGEYLIGRHKFSPNFAKIHKFKQPADSLVNHLSHPDALEGACVQALVPQGASSSRKRHSSLEKDKRKAFQEVSENFRPVMHYFFLERFLQPADWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDVIDGMGVTGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETSLEGSEDEYEGNKDAARALLRVKQKLDGYEDGEMRSVHGQVQQLIQDAIDPDRLCHMFPGWGAWL 1783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25902237 25948571 - Lsi06G015540.1 Lsi06g01554 666284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01554 1783 Coils Coil 1706 1726 - -
Lsi06g01554 1783 Pfam Phosphatidylinositol 3- and 4-kinase 1432 1699 IPR000403 -
Lsi06g01554 1783 Gene3D - 1557 1744 IPR036940 GO:0016301
Lsi06g01554 1783 SUPERFAMILY Protein kinase-like (PK-like) 1380 1710 IPR011009 -
Lsi06g01554 1783 SMART pi3k_hr1_6 1426 1747 IPR000403 -
Lsi06g01554 1783 Coils Coil 1182 1202 - -
Lsi06g01554 1783 Gene3D - 1332 1484 - -
Lsi06g01554 1783 Pfam FATC domain 1754 1783 IPR003152 GO:0005515
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 59 104 IPR038980 GO:0004674|GO:0006974
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1545 1783 IPR038980 GO:0004674|GO:0006974
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 103 877 IPR038980 GO:0004674|GO:0006974
Lsi06g01554 1783 MobiDBLite consensus disorder prediction 557 576 - -
Lsi06g01554 1783 SMART FATC_2 1751 1783 IPR003152 GO:0005515
Lsi06g01554 1783 ProSiteProfiles FATC domain profile. 1751 1783 IPR003152 GO:0005515
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1545 1783 - -
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 103 877 - -
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 907 1499 IPR038980 GO:0004674|GO:0006974
Lsi06g01554 1783 ProSiteProfiles FAT domain profile. 618 1313 IPR014009 -
Lsi06g01554 1783 CDD PIKKc_ATM 1396 1700 IPR044107 GO:0004674|GO:0006281|GO:0006974
Lsi06g01554 1783 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1399 1738 IPR000403 -
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 907 1499 - -
Lsi06g01554 1783 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 59 104 - -
Lsi06g01554 1783 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 1429 1444 IPR018936 GO:0016301
Lsi06g01554 1783 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 1593 1613 IPR018936 GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01554 K04728 ATM, TEL1; serine-protein kinase ATM [EC:2.7.11.1] - csv:101208785 2632.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01554 Lsi-Chr6:25902237 Lsi11g01223 Lsi-Chr11:20816695 1.61E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g743 . . . . . . . . . . . . . . Sed12g2440 . Cpe04g01556 Bhi02g00449 Tan09g2251 Cmetu02g0993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01554 . . Cme02g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002889 1 3 3 2 1 1 5 2 1 2 1 1 1 1 2 2 1 1 4 1 1 1 2 3 3 3 1 1 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01554 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.335858 0.361608 0.340822 0.0 0.0